Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 52 [1] [1] 53 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.020)49 (1.280) 43/268 0.0 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

GTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/257767‑258045
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tagaaaaatgtGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                          <  2:108973‑M1/140‑3 (MQ=255)
gtTAAGAATTTGCAGAATTGTGACAATTTGGTACAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                          <  1:627157‑M1/143‑3 (MQ=255)
 ttAATAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                         <  2:423148‑M1/143‑4 (MQ=255)
 ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGCTAGACAGTGGACACACGAAGCGACGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                         >  1:515456‑M1/1‑140 (MQ=255)
   aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc                                                                                                                                       >  1:136039‑M1/1‑138 (MQ=255)
     aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGAAGCGGCGCCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                     >  2:726138‑M1/1‑136 (MQ=255)
      aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGTTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                    <  2:395033‑M1/143‑9 (MQ=255)
         ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGATATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                 <  2:428041‑M1/143‑12 (MQ=255)
            cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                              <  2:362391‑M1/143‑15 (MQ=255)
                  gtggccgATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAATATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                        <  1:75929‑M1/140‑21 (MQ=255)
                      ccAATTTGGTAAAACAGTTGCATTACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                    <  2:121002‑M1/143‑25 (MQ=255)
                        aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatagattattttac                                                                                                                  >  1:623912‑M1/1‑117 (MQ=255)
                           ttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAcgtgcaaagataatcgcttctttttcgat                                                                                                               >  2:574867‑M1/1‑114 (MQ=255)
                            tGGAAAGACAGGTGCGTCGCAACAGGAGAGAGGAATGACGGCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                              <  2:3441‑M1/143‑31 (MQ=255)
                               tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                           >  2:421297‑M1/1‑110 (MQ=255)
                                aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                          <  2:401328‑M1/143‑35 (MQ=255)
                                          cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                <  2:136039‑M1/143‑45 (MQ=255)
                                                 acaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTGACCGCACTAGGCCCGTATATTCGCGAAGGTAagtgcaaagataatcgattctttttcaattgtctgactgtatgagtcaaca                                                                                         >  2:414001‑M1/1‑92 (MQ=255)
                                                   aGGAGATAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGACCGTATATTCGTGAAGGTAagtgcaaagatagtcaattctttttcaattgtacagctgtctgcgtcaccgtg                                                                                       >  1:156151‑M1/1‑90 (MQ=255)
                                                        aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctataagcgtcaacgtgcaaac                                                                                  >  2:686729‑M1/1‑85 (MQ=255)
                                                              aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgacgtgaaaccggcacc                                                                            >  2:725211‑M1/1‑79 (MQ=255)
                                                               tgccgttACCGAGTGGACACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCACGTATATTCGTGGAGGTCagtgcaaagatcatcgattctttttcgggtgtctggctttatgcgcgaacgggacaccgccaccg                                                                           >  2:627389‑M1/4‑78 (MQ=255)
                                                                   gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGATGGTCagtgcatagataatcgattctttttcgattatctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                       >  2:546124‑M1/1‑74 (MQ=255)
                                                                       ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattggctggctgtatgcgtcaacgtgaaacccgcaccggaagggcg                                                                   >  1:79166‑M1/1‑70 (MQ=255)
                                                                         gAGTGGACACCCTAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                                 <  2:459053‑M1/143‑76 (MQ=255)
                                                                            tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat                                                              >  1:726370‑M1/1‑65 (MQ=255)
                                                                              gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                            >  2:534456‑M1/1‑63 (MQ=255)
                                                                              gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                            >  1:610861‑M1/1‑63 (MQ=255)
                                                                                 acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgcatgctgg                                                         >  1:734450‑M1/1‑60 (MQ=255)
                                                                                   ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaatccggcaccggaagatcgtgaattatgggg                                                       >  2:88886‑M1/1‑58 (MQ=255)
                                                                                    cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattggctggctgtatgagtcaacgtgaaaccggcacctgaggtgcgtggattctggggc                                                      >  2:687916‑M1/1‑57 (MQ=255)
                                                                                        gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                  <  2:566689‑M1/143‑91 (MQ=255)
                                                                                           cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccagaagagcgtaaattatggggttggtgga                                               >  2:403839‑M1/1‑50 (MQ=255)
                                                                                            aGATTGTGCAAAAAATTTAGCGCGTGAGGCTCGTATGTGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                              <  1:379178‑M1/143‑95 (MQ=255)
                                                                                             gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                             >  2:697766‑M1/1‑48 (MQ=255)
                                                                                                     aaaaaaGTTACCGGACTAGGCGCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                     <  2:720279‑M1/143‑104 (MQ=255)
                                                                                                      aataatttACCGAATTAGGAACGTATATTTGTGAAGGTAagtgcaaagataatcgattatttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                    <  2:606656‑M1/140‑105 (MQ=255)
                                                                                                          acttacCGCTCTAGGCCCGGACATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc                                <  2:117970‑M1/141‑109 (MQ=255)
                                                                                                          aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc                                <  1:726138‑M1/143‑109 (MQ=255)
                                                                                                           tgtacCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                               <  2:515456‑M1/141‑110 (MQ=255)
                                                                                                           aacaccctgcttggcccgtatattcgTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                               <  1:624581‑M1/131‑110 (MQ=255)
                                                                                                                 gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtttgcgtcaacgtgaaaccggcaccggaagtgcgtgaatactagagcagaaggatagagctggaagcgcaggaatg                         >  2:134851‑M1/1‑28 (MQ=255)
                                                                                                                 gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                         >  1:491653‑M1/1‑28 (MQ=255)
                                                                                                                    cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgaggctggtggatggaacaagaagcgcaggaatcccg                      >  2:611777‑M1/1‑25 (MQ=255)
                                                                                                                        gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgtgcgtgaattctggggctgctggatggagctggaagcgcaggaatcccgtttc                  >  1:173236‑M1/1‑21 (MQ=255)
                                                                                                                          ccGTATATTCGGTAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                <  1:414001‑M1/143‑125 (MQ=255)
                                                                                                                              ctattCGTGGACGTAagtgcaatgatattcgattctttttcgattgtctgtgtgtatgcgtcaacgtgataccggcaccggaagtgcgtgaattctggggcttgtggatggagctggaagcgcaggaatcccgttttacctac            <  1:463087‑M1/142‑129 (MQ=255)
                                                                                                                               tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggtgctggtggatggagctggaagcgcaggaatcccgttttacctaga           >  2:403199‑M1/1‑14 (MQ=255)
                                                                                                                                  tctttaaggtaagtgaaaagataatctatgctttttcggttgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt        <  1:683467‑M1/138‑133 (MQ=255)
                                                                                                                                  tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacactt        >  2:259492‑M1/1‑11 (MQ=255)
                                                                                                                                      gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggtagtgcgtgaattcttgggctggtggaaggagatggaagcgcaggaatcccgttgtacctacagttacca    >  2:262911‑M1/1‑7 (MQ=255)
                                                                                                                                        atgtagttaATGACTCCAACTAATTAATAGTGTATGATGCACAGATAATGCCCGATGACTTGGTCATGCAGCTCCACCGATTTCGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATg  <  2:27036/141‑1 (MQ=11)
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GTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/257767‑258045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.