Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 52 [1] [1] 53 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.020)49 (1.280) 43/268 0.0 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258543‑258826
                                                                                                                                             |                                                                                                                                              
tagaaaaatgtgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                                                                                                               <  2:108973‑M2/2‑1 (MQ=255)
gttaagaatttgcagaattgtgacaatttggtacaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                                                                                                               <  1:627157‑M2/2‑1 (MQ=255)
 ttaataatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                                                                                                              <  2:423148‑M2/3‑1 (MQ=255)
 ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgctagacagtggacacacgaagcgacgagtgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                                                                                                              >  1:515456‑M2/141‑143 (MQ=255)
   aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                                                                                                                            >  1:136039‑M2/139‑143 (MQ=255)
     aaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagaagcggcgccaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                                                                                                                          >  2:726138‑M2/137‑143 (MQ=255)
      aatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagttagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                                                                                                                         <  2:395033‑M2/8‑1 (MQ=255)
         ttgctaaattttgccaatttggtaaaacagttgcatcacaacaggatatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                                                                                                                      <  2:428041‑M2/11‑1 (MQ=255)
            ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   <  2:362391‑M2/14‑1 (MQ=255)
                  gtggccgatttggtaaaacagttgcatcacaacaggagatagcaaggacgttaccgagtggacacccgaagagcagagtgatcaaaatatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                                                                                                             <  1:75929‑M2/20‑1 (MQ=255)
                      ccaatttggtaaaacagttgcattacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                         <  2:121002‑M2/24‑1 (MQ=255)
                        aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATAGATtattttac                                                                                                                       >  1:623912‑M2/118‑141 (MQ=255)
                           ttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaCGTGCAAAGATAATCGCTTCTTTTTCGAt                                                                                                                    >  2:574867‑M2/115‑143 (MQ=255)
                            tggaaagacaggtgcgtcgcaacaggagagaggaatgacggcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                                                                                                                   <  2:3441‑M2/30‑1 (MQ=255)
                               taaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                >  2:421297‑M2/111‑143 (MQ=255)
                                aaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                                                                                                               <  2:401328‑M2/34‑1 (MQ=255)
                                          catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                     <  2:136039‑M2/44‑1 (MQ=255)
                                                 acaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaattgaccgcactaggcccgtatattcgcgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTCTGACTGTATGAGTCAaca                                                                                              >  2:414001‑M2/93‑142 (MQ=255)
                                                   aggagatagcaatgacgttaccgagtgaacacccgaagagcagattgatcaaaaaatttaccgcactaggaccgtatattcgtgaaggtaAGTGCAAAGATAGTCAATTCTTTTTCAATTGTACAGCTGTCTGCGTCACCGTg                                                                                            >  1:156151‑M2/91‑143 (MQ=255)
                                                        atagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTATAAGCGTCAACGtgcaaac                                                                                       >  2:686729‑M2/86‑141 (MQ=255)
                                                              atgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCGACGTGAAACCGGCAcc                                                                                 >  2:725211‑M2/80‑143 (MQ=255)
                                                               tgccgttaccgagtggacacccgaagagcagattgctcaaaaaatttaccgcactaggcacgtatattcgtggaggtcAGTGCAAAGATCATCGATTCTTTTTCGGGTGTCTGGCTTTATGCGCGAACGGGACACCGCCACCg                                                                                >  2:627389‑M2/79‑143 (MQ=255)
                                                                   gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgatggtcAGTGCATAGATAATCGATTCTTTTTCGATTATCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAg                                                                            >  2:546124‑M2/75‑143 (MQ=255)
                                                                       ccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAAACCCGCACCGGAAGGGCg                                                                        >  1:79166‑M2/71‑143 (MQ=255)
                                                                         gagtggacaccctaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTg                                                                      <  2:459053‑M2/75‑1 (MQ=255)
                                                                            tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAt                                                                   >  1:726370‑M2/66‑143 (MQ=255)
                                                                              gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTc                                                                 >  2:534456‑M2/64‑143 (MQ=255)
                                                                              gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTc                                                                 >  1:610861‑M2/64‑143 (MQ=255)
                                                                                 acccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGCATGCTgg                                                              >  1:734450‑M2/61‑143 (MQ=255)
                                                                                   ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAATCCGGCACCGGAAGATCGTGAATTATgggg                                                            >  2:88886‑M2/59‑143 (MQ=255)
                                                                                    cgaagagcagattgatcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGGCTGGCTGTATGAGTCAACGTGAAACCGGCACCTGAGGTGCGTGGATTCTGGGGc                                                           >  2:687916‑M2/58‑143 (MQ=255)
                                                                                        gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                       <  2:566689‑M2/90‑1 (MQ=255)
                                                                                           cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCAGAAGAGCGTAAATTATGGGGTTGGtgga                                                    >  2:403839‑M2/51‑143 (MQ=255)
                                                                                            agattgtgcaaaaaatttagcgcgtgaggctcgtatgtgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                   <  1:379178‑M2/94‑1 (MQ=255)
                                                                                             gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                  >  2:697766‑M2/49‑143 (MQ=255)
                                                                                                     aaaaaagttaccggactaggcgcgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          <  2:720279‑M2/103‑1 (MQ=255)
                                                                                                      aataatttaccgaattaggaacgtatatttgtgaaggtaAGTGCAAAGATAATCGATTATTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                         <  2:606656‑M2/104‑1 (MQ=255)
                                                                                                          atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcgc                                     <  1:726138‑M2/108‑1 (MQ=255)
                                                                                                          acttaccgctctaggcccggacattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcgc                                     <  2:117970‑M2/108‑1 (MQ=255)
                                                                                                           tgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  2:515456‑M2/109‑1 (MQ=255)
                                                                                                           aacaccctgcttggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  1:624581‑M2/109‑1 (MQ=255)
                                                                                                                 gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTTTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATACTAGAGCAGAAGGATAGAGCTGGAAGCGCAGGAatg                              >  2:134851‑M2/29‑142 (MQ=255)
                                                                                                                 gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc                              >  1:491653‑M2/29‑143 (MQ=255)
                                                                                                                    ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGAGGCTGGTGGATGGAACAAGAAGCGCAGGAATCCCg                           >  2:611777‑M2/26‑143 (MQ=255)
                                                                                                                        gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGACGTGCGTGAATTCTGGGGCTGCTGGATGGAGCTGGAAGCGCAGGAATCCCgtttc                       >  1:173236‑M2/22‑142 (MQ=255)
                                                                                                                          ccgtatattcggtaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                     <  1:414001‑M2/124‑1 (MQ=255)
                                                                                                                           ctgattttcgtGAACGTAAGTGCAAAGTTAATCGTGTCTTTTTCGATTGTCTGGCTGTATGCGTTGACGTGAAACCGGCACTGGAAGTGCTTTAATTCTGGGGCTGGTGGTTGCAGCGAGAAGCGCAGGAATCCCGTTTTAcc                    <  1:270538/133‑1 (MQ=255)
                                                                                                                              ctattcgtggacgtaAGTGCAATGATATTCGATTCTTTTTCGATTGTCTGTGTGTATGCGTCAACGTGATACCGGCACCGGAAGTGCGTGAATTCTGGGGCTTGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTAc                 <  1:463087‑M2/128‑1 (MQ=255)
                                                                                                                               tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGTGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACctaga                >  2:403199‑M2/15‑141 (MQ=255)
                                                                                                                                  tctttaaggtaAGTGAAAAGATAATCTATGCTTTTTCGGTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt             <  1:683467‑M2/132‑1 (MQ=255)
                                                                                                                                  tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACACtt             >  2:259492‑M2/12‑143 (MQ=255)
                                                                                                                                      gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGTAGTGCGTGAATTCTTGGGCTGGTGGAAGGAGATGGAAGCGCAGGAATCCCGTTGTACCTACAGTTACCa         >  2:262911‑M2/8‑143 (MQ=255)
                                                                                                                                             aGTGCAAAGATAAGCGATGCGTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  2:156151/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258543‑258826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.