| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 25 (0.620) | 7 (0.200) | 7/252 | 3.3 | 20.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 34 (0.950) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC > NC_000913/1207651‑1207931 | gtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTgg > 2:697703/1‑143 (MQ=255) ggCAGCCGGTGCCGGCCTGGAGATGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg < 1:600501/143‑1 (MQ=255) ggTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGAGAAgg > 2:683607/1‑143 (MQ=255) gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 2:536007/143‑1 (MQ=255) gcgtagtcaaGGGGCAGCACTACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGAAAGAATCCGTTTGGCTATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTTTGGGAGAAGGAGCaaaa < 1:83000/135‑1 (MQ=255) ggAGAAGGGGCGGCACGACCAGTTACTTACCGCACCTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa < 2:616242/143‑1 (MQ=255) aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATAGAAATCCTTCTTTTGGGAGAAGGAGCAAAACTCAAtac > 2:191732/1‑141 (MQ=21) tacgcacCGCTCTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCCAAACCCTTGGTTTGTGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:637324/138‑1 (MQ=21) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAGCTCAATGCAGCAACGGCGACATTAGGACGCACCg > 2:115795/1‑143 (MQ=255) ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAACCCTTGGTTTGGGTGTAGGAGCTAAACTCAATGCAGAAACGAATACATTAGAAAGCaacaaatac > 2:30811/1‑135 (MQ=18) ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGGGCAAAACTCAATGCAGCAAAGGATACATTAGGACGCACCGGTATCAGAGCTATACCGGTTATGa > 2:336981/1‑143 (MQ=25) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGTAGCAACGGCTACAATAGGACCCACCGGGGTCATAGCTATACCGGTTATGATagg > 1:148419/1‑143 (MQ=37) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa < 1:493101/143‑1 (MQ=255) gttGGCGCTATCGAATCGGATGGCACTGTGCCAAGGGCTCTTGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa < 1:356316/142‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCGCCGGTTTCATAGCTATACCGGGTAGGCTTGGTGGTATTGAGCaa > 1:281497/1‑143 (MQ=255) gATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAGCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc < 1:345967/143‑1 (MQ=255) tgaaTCGTTTGGCGGTGTGCAAACGGCGTTATGAAACCTGGGTTTAGGAGAAGGAGCAAAACTTAATGCAGCAAAGGCTACATTAGGACGCAGCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa < 1:126728/141‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGAACCGGTTTCATAGCGATACCAGTTATGATCGCAGGAATTGATCAATCAGCAAt > 1:667906/1‑143 (MQ=38) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCGGCACCGGTTTCCTAGCCATGCCGGCCGGGATTGGTGGTCATGAGCAATCAGCAATAATACa > 2:662508/1‑143 (MQ=25) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATTATGAAGATGACAAATGGTATGGAACAATCAGTAAAAATTCAg > 2:491909/1‑143 (MQ=255) ggcgggcGAAAACCGGGGTGTGGGAGAAGGAGGAAGACTCAATGCAGCAACGGTTACATTAGGACGCACCGGTTTGATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg < 2:218007/137‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaa > 2:633551/1‑143 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACAGGTTATGATTGGTGGTATTGAGTAATCAGTAATCATTCAGTGGGGGTGGAATGTCGCaa > 1:272808/1‑143 (MQ=255) ttgatagccTTGGTTTGGGAGAGGCAGAAAAACGCAAGTCAGCAACGGCTACATTAGGACGCTCCGGTTTCATAGCTATACGGGTTATGATTGGTAGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa < 1:539108/136‑1 (MQ=255) aaCGTTGGTTGCAGAGAAGGAGCAAAACCCAATGCAGCAACTGTTACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATc < 1:661623/143‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCAGCAAAAGCATCTGc > 2:412908/1‑143 (MQ=255) | GTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC > NC_000913/1207651‑1207931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |