New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	25 (0.620)	7 (0.200)	7/252	3.3	20.0%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	34 (0.950)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209481‑1209758                                                                                                                                           |                                                                                                                                            gATAAGCCTTTGCCAGTTCCGGTTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                         <  2:543721/143‑1 (MQ=255)          ttGTCAGTTTCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg                                                                                                                                <  2:282166/143‑1 (MQ=255)            gCCAGTTCCGGGTATTCTTCAGCATAACAAGCGGCACCCTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATgaa                                                                                                                              <  1:52413/143‑1 (MQ=255)            gCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCATCTTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                              <  2:190090/143‑1 (MQ=255)                   ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                       <  1:211436/143‑1 (MQ=255)                      ggTATTCTTCAGCAGAAAAAGCCGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                    <  2:118992/143‑1 (MQ=255)                       gTATTCTGCAGGAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                                   <  1:725008/143‑1 (MQ=255)                        tATGCTTCAGCAGAAAAGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                  <  1:618020/143‑1 (MQ=255)                        gaTTCTGCAGCCGAAAAAGCGGCACCATTGCGTTTCTGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                  <  1:527298/142‑1 (MQ=255)                             ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAACTGACGAAATACCAAGCaaaag                                                                                                             >  2:138291/1‑141 (MQ=255)                             ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGACAACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCACCCAAACCACAGACAATGAAAATGAAGAAATAACAAGAAAATg                                                                                                             >  1:671276/1‑143 (MQ=255)                                 gcagAGCAAGCGGCGCGATGGCCTGTGAGCCAGGCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat                                                                                                         <  1:325776/143‑1 (MQ=255)                                  cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCCGAAGGCCACGGAACCGAGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAGAAGAAATAACAAGCAAATGGcatc                                                                                                        >  2:183430/1‑143 (MQ=255)                                         ggCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCACATCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTg                                                                                                 <  1:675717/142‑1 (MQ=255)                                                   ttGCATTTCATCCATCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATTAAAATGAATTAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                                       <  2:166244/143‑1 (MQ=255)                                                   ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTATTACCAg                                                                                       >  1:186616/1‑143 (MQ=255)                                                               ccgccTGTTGGCGGAGTGGCTGCAGGCCACGGAACTGCTACACCATCAGTTATTGCAGAGCCTTCTCCCAAACCACCTTTCATGTAAATGAAAAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                           <  1:10375/141‑1 (MQ=255)                                                                       tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                   <  2:682338/143‑1 (MQ=255)                                                                          cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGATTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                >  1:660238/1‑143 (MQ=255)                                                                                 gCTGAAGGCCACGGAACCGGGACACGAACAGGTACTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                         <  1:239696/143‑1 (MQ=255)                                                                                  cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTGTACAAGGGAGAATTAACATGCTTAATGGCTATGTAcg                                                        >  2:515540/1‑143 (MQ=255)                                                                                      aGGCCACGGACCGGGGACAGCAACAGGTAATGCATAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa                                                    <  1:509868/143‑1 (MQ=255)                                                                                         ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca                                                 >  1:586372/1‑143 (MQ=255)                                                                                         ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTCAACATGCTTATTGGCTATGTACGCGTATca                                                 >  1:236353/1‑143 (MQ=255)                                                                                           aCGGAAACGAGAAACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAAATAAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCACATTGGCTATGAACGCGTATcaac                                               >  1:718530/1‑143 (MQ=255)                                                                                              gAACCGGGACACTAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAATAAGTTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                            <  2:201616/143‑1 (MQ=255)                                                                                                   gggACACCAACAGGTAAGGGAGAGCTTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTATGCGTATCAACAAATGAcc                                       <  1:312919/143‑1 (MQ=255)                                                                                                      acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAGGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTAATAGACAATGTACGCGTATCAACAAATGACCAGa                                    >  2:29187/1‑143 (MQ=255)                                                                                                       cacCAACAGGTAATGCAGAGCCTTCTCGCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                                   <  1:720751/143‑1 (MQ=255)                                                                                                          cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTATTGGGTACGTAAGAGTATCAGCAAAGGAGTAGAacac                                >  1:171769/1‑143 (MQ=255)                                                                                                            aCAGGTAATGCAGAGCATTCTACCAAAACAACGATTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTTTACAAGGGGGATTTAACATGCATATTGGCTATGTAGGCGGATCAACAACTGACCCGAACACAg                              >  1:573352/1‑143 (MQ=255)                                                                                                                gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCAGAACACAGATCt                          >  1:215872/1‑143 (MQ=255)                                                                                                                 tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAACTa                         >  1:372592/1‑143 (MQ=255)                                                                                                                    tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                      >  1:189086/1‑143 (MQ=255)                                                                                                                              tctcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc            <  2:284862/143‑1 (MQ=255)                                                                                                                                tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg          <  2:586372/143‑1 (MQ=255)                                                                                                                                  ccAAACCAACGTTTATGACAATGAATAAATATCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGACCAGAACCCAGATCTACAACGTAATGCGCTGaa        <  1:102110/143‑1 (MQ=255)                                                                                                                                  ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTACGAGTATCAACAAATGACCAGAAACCAGATCTACAACGTAATGCGATGaa        >  2:155269/1‑143 (MQ=255)                                                                                                                                  ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTACTGCTTTTACAAGAGGAATTTAACATGCTTATTGACTATGTACACGTAACAACAAATGACAAGAACACAGATCTACAACATAATGAGCAGaa        >  1:405087/1‑143 (MQ=255)                                                                                                                                   cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACGAGGGGGATTTACCATGCTTATTGGCTATGTAGNCGTATCAACAAATGACAAGAACACAGATCTCCAACGTAATgcgaggaag       >  2:377868/1‑137 (MQ=255)                                                                                                                                        cgaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc  <  2:516429/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209481‑1209758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.