New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3740481 =	40 (0.990)	3 (0.080)	3/266	5.4	7.6%	coding (778/1254 nt)	avtA	valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase
	?	NC_000913	3740570 =	35 (0.920)					coding (867/1254 nt)	avtA	valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATTCCGCTGGTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAA  >  NC_000913/3740339‑3740613                                                                                                                                               |                                                                                                                                     cATTCCGCTGGTGATTGATAACGCTTATGTCGTCCCGTTCCCTTGTTTCATCTTCAGTGAAGCGCGCCCGCCACGGAAGCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTa                                                                                                                                      <  2:268023/143‑1 (MQ=255)           gTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCCTTCCAAGCTGGGTCTACATGGCTCCCGCTGCGGCATTATCATCGCCaa                                                                                                                            >  1:16382/1‑143 (MQ=255)             gattgatAACGCTTTTGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATg                                                                                                                          <  2:588641/143‑1 (MQ=255)             gattgatAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTATCATCGCCAATg                                                                                                                          >  2:632119/1‑143 (MQ=255)                ttatttctcTTATGGCGGCCCGTTCCCGGTTATCATCTTCTGTGATGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGaaa                                                                                                                       <  1:732897/135‑1 (MQ=255)                 gatAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCACGCTGGGTCTACCTTGCACCCGCTGCGGCATTCTCATCGCCAATGaaaa                                                                                                                      >  2:686895/1‑143 (MQ=255)                  ctcgcGCTTCTGGCTCTCCGTTCCCGGGTATCATCTTCAGGGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGaaaaa                                                                                                                     <  1:554609/139‑1 (MQ=255)                  atAACGCTTATGGCGCCCCGCTCCCGGGTATCATCTTCAGCGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGaaaaa                                                                                                                     <  2:434715/143‑1 (MQ=255)                       gCTTATGGCGTCCCGTTCTCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGCGCATGAGTCTTTCCAAGCTGGGTCTACCTGACTCCCGCTGCGGCATTATCATCGCCAATGAAAAAatcat                                                                                                                <  1:127032/143‑1 (MQ=255)                         ttATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGCATATCGTGCTGTGCATGAGTCTTTCCATGCTGGGTCTACCTTGCTACCGCTGCGGCATTATCATAGTAAATGAAAAaataataa                                                                                                              >  2:107337/1‑141 (MQ=255)                                 tCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCCATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATc                                                                                                      <  2:328597/143‑1 (MQ=255)                                      ttCCCGGGTATCATCTTCAGTGAAGCGCGCTCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCaa                                                                                                 <  2:418915/143‑1 (MQ=255)                                       tcgcGGGTATCATCTCCGGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAat                                                                                                <  1:681202/140‑1 (MQ=255)                                         ccGGGTATCATCTTCAGTGAAGCGCACCCGCTATGGAATCCGAATATCGTGCTGTACATGAGTCTTTCCAAGCTTGGTCTACCTGGCTCCCGCTGCCGCATGCGCATCGCAAATGAAGAAATCATCAccactagccgcaatat                                                                                              >  1:719823/1‑129 (MQ=255)                                                tcatcTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCCCTGCGGCATTATCATCGCCCATGAAAAAATCACCACCGCCATCACCAATATGAACGGc                                                                                       >  1:687158/1‑143 (MQ=255)                                                 gaggttgagggaggcgcgcCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCa                                                                                      <  2:677147/130‑1 (MQ=255)                                                 catgTTTAGTGAAGCGAGCCCGCTATGGAATCCGAATATCGTGCTGTGCATTATTCTTTCTAAGCTTTGTTTACCTGGCTCCCGATGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCa                                                                                      <  2:157627/143‑1 (MQ=255)                                                       cAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATTATCACCGCCATCACCAATATGAACGGCAATAACa                                                                                >  2:377962/1‑143 (MQ=255)                                                         gTGAATCGCGTCCGCTATGGAATACCAATATCGTGCAGTGCATGCGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCCGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGc                                                                              <  2:421532/143‑1 (MQ=255)                                                           gAAGCCCGCCCGCTATGGAATCTGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCt                                                                            <  2:680983/143‑1 (MQ=255)                                                              gcgctcCTGCCATGATATCAGAGTGTCGTGCTCTGCCTCGGGCTGTCTAAGCTGGGTCTACCTGGCTCCCGCGGCGGCATTATCATCGCCAATGAAATAATCATCACCGCCTTCTCCGTTATGAACGGCATTATCAGCCTGGc                                                                         <  1:481784/143‑1 (MQ=255)                                                                                 cGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGCGTCTACCTGGCTCCCTCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCg                                                      <  1:686018/143‑1 (MQ=255)                                                                                         gTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCgatgat                                              <  1:471498/143‑1 (MQ=255)                                                                                             tgtgCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGAACCGGGCGGGCTCGGTCCGACGATGAagtgt                                          >  1:326720/1‑143 (MQ=255)                                                                                                gCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCAGCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGaa                                       <  2:425025/143‑1 (MQ=255)                                                                                                      gTCTATCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCCGGCGGTATTGGTCCGGCGATGATGTGTGAAATGAtt                                 <  2:467271/143‑1 (MQ=255)                                                                                                       tCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGCAGTGTGAAATgcaca                                >  1:389749/1‑139 (MQ=255)                                                                                                        cTTTCCTCGTTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAAAATCATCACCGCCCGCGCCAATTTGATCGGCATTATCAGCCGGGCACCTGGCGGTATTGGTCCGGTGATGATGTGTGACATGATTaa                               <  1:260160/143‑1 (MQ=255)                                                                                                         tttCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTTTCATCTCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAg                              <  2:16382/143‑1 (MQ=255)                                                                                                          ttCCAATCTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAATATCATCACCGCCATCACTAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGc                             <  1:299227/143‑1 (MQ=255)                                                                                                           tCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGCGTGAAATGATTAAGCg                            >  1:711192/1‑143 (MQ=255)                                                                                                               aGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAAAATGAACGGCATTATCAGCCTGGCACCTGGCGGTCGTCGTCCGGCGCCGGCGTGTGGTCTGATTAAGCGTaaa                        >  2:20749/1‑142 (MQ=255)                                                                                                                tctgttgcTACCGTGCTCATGCTGTGTCATTATCATCGGCAATCAAAAAATCATCACCGCCATCTCCAATATTAACTGCATTATTATCCTGGCACTTTGCGGTATTGGTCCGGCTATGATGTGTGAAATGATTAAGCGTAACg                       <  1:96486/136‑1 (MQ=255)                                                                                                                       ccaCCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATACGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATctgct                <  2:508465/141‑1 (MQ=255)                                                                                                                           ctttcTCCCGCTGCGGCTTTCTCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCTGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc            <  1:335859/139‑1 (MQ=255)                                                                                                                           cTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGCCAACAGGAGGAATTGGAAAGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc            >  2:434368/1‑143 (MQ=255)                                                                                                                              gCTCCCGCTGCGGCATTATCATCGCCAAAGAAAAAATCCTCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTACCGGAATTGGTCCGGCGATGAGGAGTGAAATGATTAAGCGTAACGACccgctccacatg         >  1:218628/1‑136 (MQ=255)                                                                                                                                    gCTGCGGCATTATCATCGCCAATGAAAAAATCATCCCCGCCATCACCAATATGACCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa   >  1:99018/1‑143 (MQ=255)                                                                                                                                    gCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGGACGGCATTATCAGCCTGGCATCTGGCGGTATTGGTACGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa   >  2:553107/1‑143 (MQ=255)                                                                                                                                     cTGCGGCAGTATCATGGCCAATGAAAATATCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaaa  <  1:248298/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                     CATTCCGCTGGTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAA  >  NC_000913/3740339‑3740613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.