New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3740481 =	40 (0.990)	3 (0.080)	3/266	5.4	7.6%	coding (778/1254 nt)	avtA	valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase
	?	NC_000913	3740570 =	35 (0.920)					coding (867/1254 nt)	avtA	valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGAA  >  NC_000913/3740431‑3740711                                                                                                                                            |                                                                                                                                              tgtgCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGAACCGGGCGGGCTCGGTCCGACGATGAagtgt                                                                                                                                            >  1:326720/1‑143 (MQ=255)    gCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCAGCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGaa                                                                                                                                         <  2:425025/143‑1 (MQ=255)          gTCTATCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCCGGCGGTATTGGTCCGGCGATGATGTGTGAAATGAtt                                                                                                                                   <  2:467271/143‑1 (MQ=255)           tCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGCAGTGTGAAATgcaca                                                                                                                                  >  1:389749/1‑139 (MQ=255)            cTTTCCTCGTTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAAAATCATCACCGCCCGCGCCAATTTGATCGGCATTATCAGCCGGGCACCTGGCGGTATTGGTCCGGTGATGATGTGTGACATGATTaa                                                                                                                                 <  1:260160/143‑1 (MQ=255)             tttCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTTTCATCTCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAg                                                                                                                                <  2:16382/143‑1 (MQ=255)              ttCCAATCTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAATATCATCACCGCCATCACTAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGc                                                                                                                               <  1:299227/143‑1 (MQ=255)               tCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGCGTGAAATGATTAAGCg                                                                                                                              >  1:711192/1‑143 (MQ=255)                   aGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAAAATGAACGGCATTATCAGCCTGGCACCTGGCGGTCGTCGTCCGGCGCCGGCGTGTGGTCTGATTAAGCGTaaa                                                                                                                          >  2:20749/1‑142 (MQ=255)                    tctgttgcTACCGTGCTCATGCTGTGTCATTATCATCGGCAATCAAAAAATCATCACCGCCATCTCCAATATTAACTGCATTATTATCCTGGCACTTTGCGGTATTGGTCCGGCTATGATGTGTGAAATGATTAAGCGTAACg                                                                                                                         <  1:96486/136‑1 (MQ=255)                           ccaCCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATACGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATctgct                                                                                                                  <  2:508465/141‑1 (MQ=255)                               ctttcTCCCGCTGCGGCTTTCTCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCTGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc                                                                                                              <  1:335859/139‑1 (MQ=255)                               cTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGCCAACAGGAGGAATTGGAAAGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc                                                                                                              >  2:434368/1‑143 (MQ=255)                                  gCTCCCGCTGCGGCATTATCATCGCCAAAGAAAAAATCCTCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTACCGGAATTGGTCCGGCGATGAGGAGTGAAATGATTAAGCGTAACGACccgctccacatg                                                                                                           >  1:218628/1‑136 (MQ=255)                                        gCTGCGGCATTATCATCGCCAATGAAAAAATCATCCCCGCCATCACCAATATGACCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa                                                                                                     >  1:99018/1‑143 (MQ=255)                                        gCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGGACGGCATTATCAGCCTGGCATCTGGCGGTATTGGTACGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa                                                                                                     >  2:553107/1‑143 (MQ=255)                                         cTGCGGCAGTATCATGGCCAATGAAAATATCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaaa                                                                                                    <  1:248298/143‑1 (MQ=255)                                                             aTGAACAAATCATCACCGCCATCACCAAGATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTtac                                                                                <  1:613921/143‑1 (MQ=255)                                                             aTGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTCCGCCTGTCTGAAACAGTCATCAAACCTtttttc                                                                                >  2:709777/1‑141 (MQ=255)                                                                ataaatTCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTtactac                                                                             <  2:101376/141‑1 (MQ=255)                                                                 aaaaaTCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTCGTCCGGCGCTGCTGTGTTAAATAATTAAGCGTAACGATCTGCTGCGACTGTATGAAACAATCCTAAAACCGTTTTACTAcc                                                                            >  2:567115/1‑143 (MQ=255)                                                                  aaaaTCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTAGTCCGGCGGTGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCa                                                                           >  1:517157/1‑143 (MQ=255)                                                                        atcaCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTACGGCGATGATGTGTGCAATGATTAAGCGTAACGATCTGATGCGCCTGTCTGAAACAGTCATCAAACTGTGTTGCTACCAGCgtat                                                                     >  1:134256/1‑141 (MQ=255)                                                                           cgcGCCATCGCCGATATGAGCGTCATTATCAGTCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCa                                                                  <  1:444310/141‑1 (MQ=255)                                                                             cGCCATCTCCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAgg                                                                <  1:632119/143‑1 (MQ=255)                                                                               gcagcACCAGTTTGAACGGCATTGTCGGCCGGGCATCTGGCGGTATTGGTCCGGGGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGaa                                                              <  2:720904/139‑1 (MQ=255)                                                                                    aCCAATATGAACGGCATTATCAGCCTGGCACATGGCGGTAGTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGACACCAAACCGTTTTACGACCAGAGCGATCAGCAAAcgaa                                                         >  1:617809/1‑140 (MQ=255)                                                                                              aCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCACACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCAtt                                               <  1:686895/143‑1 (MQ=255)                                                                                                  cATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGCAAACTATCGCCATCATTcgcc                                           >  1:687043/1‑143 (MQ=255)                                                                                                         aGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTAttt                                    >  1:366024/1‑143 (MQ=255)                                                                                                                         gTATTGGTCTGTCGATGATGTGTTAAATGATTAATCGTAACGTTCTGCTGCGCCTGTCTGAAACAGTCATCCAACCGGTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGc                    <  2:370572/143‑1 (MQ=255)                                                                                                                          ttttGGTGCGGCGATGGTGTGTGAAATGATTAATCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGcc                   <  1:491019/141‑1 (MQ=255)                                                                                                                            ttGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTg                 >  2:474006/1‑143 (MQ=255)                                                                                                                               ttCCGGAGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTTGCCGCTATTTACCGGAAAATCGCTGCCTGAtt              <  1:507082/142‑1 (MQ=255)                                                                                                                               gTCCGGCGATGATGTGTGAAATAATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCAGCTATTTACCGGAAAATCGCTgacagctt              >  1:322527/1‑136 (MQ=255)                                                                                                                                     cGATAATGTGTGAAATGATTAAGCGTAACGATCAGCGTCGCCGGTCTGAAACAGTCATCAAAAAGTTTTACTACCAGAGGATTCAAGAGACGATAGACATCATTCCCCACGATGTACCGGACAATGGCTGCAGGATTAACaaa        >  1:31122/1‑143 (MQ=255)                                                                                                                                           tgtgtgAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGaa  <  2:215139/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                              TGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGAA  >  NC_000913/3740431‑3740711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.