New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3394454 =36 (0.890)3 (0.080) 3/270 5.5 8.2% coding (1803/3801 nt) yhdP DUF3971‑AsmA2 domains protein
?NC_000913 3394493 = 33 (0.860)coding (1764/3801 nt) yhdP DUF3971‑AsmA2 domains protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACC  >  NC_000913/3394352‑3394634
                                                                                                                                             |                                                                                                                                              
aaCGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTtaataa                                                                                                                                               >  2:307013/1‑143 (MQ=255)
             ggttcTTTAATGTCAGTGTTTATCTTCCGTTTTTCTTTTGAGTAGGCAGGGAGCACGGCGGTAAGACTACGCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAat                                                                                                                                  <  2:80477/139‑1 (MQ=255)
               aCCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTATTCATCCAGAAACCGTCGTTCATAAAGCCCAGTTCAatat                                                                                                                                >  1:374571/1‑143 (MQ=255)
                  tttAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGTGATCACTGCGGTAAGATTACTCGCGCGCAAGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAAACGTCGTGAATAAAATTCAACTAAATATCaa                                                                                                                            >  1:191709/1‑143 (MQ=255)
                  tttAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTCATATCGTCCAGTTCAATATCaa                                                                                                                            >  2:419865/1‑143 (MQ=255)
                       tGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATCAACCGTCGTTAATACAGTCGAGTTCCATATCACGgcta                                                                                                                       >  1:655788/1‑143 (MQ=255)
                       tGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAACCCGTCGTTAATACACTCCCGTTCAATATCACGgttg                                                                                                                       >  2:120993/1‑142 (MQ=255)
                        gTCAGCGTCAATCAGCAGTTTTACTTTTGAGTAGTCAGGGATCACGGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGgttag                                                                                                                      <  2:355946/143‑1 (MQ=255)
                             cGTCAATCAGAAGAATTTCTTTTGAGTAGTCAGGGATCACTGCGGTCAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGCTAATAAAATCCCGTTCAATATCCACgttagttagt                                                                                                                 >  1:88505/1‑141 (MQ=255)
                              gTCTATCGGCAGTTTTTCTTGTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATg                                                                                                                <  1:423700/143‑1 (MQ=255)
                                cgctcggctgTTTTTCATTGTGGTATTCAGTCATCACTGCGGCTATATTACTCGCTGGCCCGCCGCCCAGATTAAGTTCATCTGTTTTCATCCATAATGCGTCGTTAATAAAGTTCAGTTCAATATCAAGGTTAGTTAATGCa                                                                                                              <  1:286232/134‑1 (MQ=255)
                                          tttttCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTACTAAAGTCCAGTTCAATATCAAGGTTAGCTAATGCAGGCCAGTCCg                                                                                                    >  1:388517/1‑143 (MQ=255)
                                             ttcttcTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTCATAAAGTCCACTTCAATATCAAGGATAGTTAATGCAGGCCAGTCCGGCt                                                                                                 >  2:434641/1‑143 (MQ=255)
                                                            aGGGATCACTGAGGTAAGAATACTCGCGCGCACGCCGCACAGATTAATGCCATGGGGTTTCATCAATAAACCGTCGTTAATAAAGTCCAGTTCAATATAAAGGTTAGTTAATGCAGGGGAGTCCGGATGGAAGGCAAAATTcg                                                                                  >  1:690715/1‑143 (MQ=255)
                                                              ggttCACTGCTGTAAGATTACTCTCGCGCACGCCGCCTAGATTAACGCCAGCGGGTATCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTcgcg                                                                                <  2:426212/140‑1 (MQ=255)
                                                                     tGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGGCCAGTTCAATATCAAGGTTAGTTAATGCACGCCAGTCCGGCTGGAAGGCAAAATTCGCGGTgcgcg                                                                         >  1:458856/1‑142 (MQ=255)
                                                                       cGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCATGGTTAGTTAATGCGTGCCAGTCCTGCTGGAAGGCAAACTTCGCGTTGCGCAGc                                                                       >  2:30770/1‑143 (MQ=255)
                                                                          tAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCCAGGTTCGTTCATGCATGCCTGTCCGGCTGGAAGGCAAAATTCGCGtgtctgatgggt                                                                    >  2:261484/1‑132 (MQ=255)
                                                                            aGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCAAGTCCGGCTGGAAAGCAAACATCGCGTTGCGCAGCGGcgc                                                                  >  1:385248/1‑141 (MQ=255)
                                                                              aTTACTCGCGCGCACGCCACCCAGATTAACGCCATCGGGTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATGCAGGATAGTTAATGCACGCCAGTCCGGCTGGAAGGCACACTGCGCGTTACGCAGCGGCagcc                                                                >  1:346603/1‑140 (MQ=255)
                                                                                tACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTTGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGc                                                              >  2:378717/1‑143 (MQ=255)
                                                                                  ctcgcgctcctcccgccCAGACTAATCCTATCGTTTTTCATCCATTTCCCCTCGTTAATAACGTCCAGTTCAATATCAAGGTTATTTACTTCAGGCCCGATCGGATGGTATGCAAACTTCGTGTTGCGAAGCGGCACCAGCAc                                                            <  1:482572/131‑1 (MQ=255)
                                                                                         gcACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGACCAGATCAATATCAAGGGTAGCTAATGCAGGCCAGTCAGGCTGGAAGGCAAACTTGCCGTTGCGCAGCGGCACCCGCCCTACCAAc                                                     >  1:665843/1‑143 (MQ=255)
                                                                                          cACGCCGCCTAGATTAACGCCATCGGTTTTCATCTATAAATCGTCGTGAATAAAGTCCAGTACAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACt                                                    <  2:407969/143‑1 (MQ=255)
                                                                                           aCGCCGCCCAGATTAACGCCATCGGTGTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCACGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTCGCGCAGCGGCACCAGCCCTTCAAACTg                                                   >  1:728883/1‑143 (MQ=255)
                                                                                            cgccgcCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGAAAAGTAGACGTTTCTCAGCGGCACCAGCACTTCAAACTGa                                                  <  1:398033/143‑1 (MQ=255)
                                                                                                  ccAGATTAACGCCATCGGTTTTCATCCATATACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGACAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCg                                            <  2:33020/143‑1 (MQ=255)
                                                                                                   cataTTAACGCCATCGGTTTTCATCCATAAACCGTGGCTAATAAAGTCCAGTTCAAGATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGt                                           <  2:645435/140‑1 (MQ=255)
                                                                                                   cAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGt                                           <  2:710469/143‑1 (MQ=255)
                                                                                                    aGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGCACTGATAAGACAACATGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGtt                                          <  2:727015/143‑1 (MQ=255)
                                                                                                                         aTCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTg                     >  1:614221/1‑143 (MQ=255)
                                                                                                                          tCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGACTAGAAAGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGc                    >  2:550079/1‑143 (MQ=255)
                                                                                                                           ccttAAACCGTCGTTATTAAAGTCCAGATCAAGATCAAGGGTAGGTGGGGGAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCg                   <  2:36579/140‑1 (MQ=255)
                                                                                                                                aaCCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGAACTTCGTTGTGTTTATAAGGGAAGAGTTGCGGAtgg              >  1:502308/1‑141 (MQ=255)
                                                                                                                                          aataaAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATaaa    <  2:476839/143‑1 (MQ=255)
                                                                                                                                            aaaaGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCGCCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAAcc  >  2:503660/2‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                              
AACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACC  >  NC_000913/3394352‑3394634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.