Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 42 [0] [0] 41 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)36 (0.960) 32/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999
                                                                                                                                              |                                                                                                                                              
accacctGCTTGCTAAGCGCAACTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCCCATCGTACTTCTCTACAGACAAAAAACAGTCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                <  1:568953‑M1/141‑1 (MQ=255)
aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                <  1:314170‑M1/143‑1 (MQ=255)
      ggcttgctaGCCTCTAGTTTAATACACTGGCCCTGGTGTGGTTTCATGCCTTCGCTCCTGATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          <  1:554402‑M1/142‑7 (MQ=255)
          tgctAAGCGCAAATCCAATAAACTGGCGCTGATATGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                                                                      <  2:611076‑M1/143‑11 (MQ=255)
             tAAGCGCAAAGTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtcccctgcaat                                                                                                                                   <  1:398563‑M1/143‑14 (MQ=255)
              aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGACGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctcgtctt                                                                                                                                  >  2:187805‑M1/1‑129 (MQ=255)
              aaGCGCAAAATTACGAAACTGGCGAGAATATAGATACAAGCCGTCGCTCCTCATCTTACTTATCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                  <  2:146149‑M1/143‑15 (MQ=255)
               aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAGAAAAAAGGCGACTCATCAGTCGCCTTACAAACACGTTTCCCAACGCCGCCTTCTGCcggcccctgccctcg                                                                                                                                 >  2:491898‑M1/1‑128 (MQ=255)
                 ctcaaATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  1:719991‑M1/141‑18 (MQ=255)
                 cgtaaattcAATAAACTGACGCTGATATGGTTGCAGGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  2:88101‑M1/140‑18 (MQ=255)
                     actggacttcactggcgctgtTATGGTTTTATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:620443‑M1/133‑22 (MQ=255)
                     aaTTGAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:330128‑M1/143‑22 (MQ=255)
                      aTTCAATAACCTGGCGCTGATATGGTTTCATGCCTTCGCACCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          <  2:476394‑M1/143‑23 (MQ=255)
                                    agcagagatggtgacaTGCCTTCGCTCCACCTCTTACTTTTCGACAGACAAAAAAAAGGCGACTCATCAGTCGTCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgacccctgcacttcaatgatgcgcccgtcttcggt                                                                                                            <  2:287345‑M1/136‑37 (MQ=255)
                                              ggttgatgtctTCGGTCTTCATCTTATGTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAATTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                  <  1:204870‑M1/138‑47 (MQ=255)
                                                           gCTCCTCATCTTATTTTTCTACATACTAAAAATAGGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                                     <  2:341959‑M1/143‑60 (MQ=255)
                                                           gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactaagatcatgacggtct                                                                                     >  1:417161‑M1/1‑84 (MQ=255)
                                                            gccctcagATTACTTTTCTACAGACAGAAAAAATGCGTCTCTTCAGTCGCCTTAAAAATCATTTTGCTAGCCCCGCCTTCTGCcgtcccctgcacttcaatgatgcgctcgtcttcggtcatcactacgttcatgtcggtctc                                                                                    <  1:319882‑M1/141‑61 (MQ=255)
                                                            ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGACGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgatcatgtcggtctc                                                                                    >  1:234070‑M1/1‑83 (MQ=255)
                                                             tcctcATCTTACTTTTCTACAGACAAAAAACACGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:363856‑M1/143‑62 (MQ=255)
                                                                          ttgctacAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCAAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                      <  1:683693‑M1/140‑75 (MQ=255)
                                                                             ttacatacaaAAAAAAGGCGATTCTTCAGTCGCTTTAATAATCATTTTGCCAGCGCCGCATTCTGCcggcccctgcactgcaatgatgcgcccggcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:205416‑M1/142‑78 (MQ=255)
                                                                             cTACAGACAAAAAAAAGGCTACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:718811‑M1/143‑78 (MQ=255)
                                                                              tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgttcgctgcacttcaatgttgcgcccgttttcggtcatcactacgttcatgtagtgctccacggcagagacttcacc                                                                  >  2:146784‑M1/1‑65 (MQ=255)
                                                                                   aCAAAAAAAAGGCGACTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaagcgcccctcttcggtcatcactaagttcatgtcggtctctgcggcaaagactccaaacaact                                                             >  1:231906‑M1/1‑60 (MQ=255)
                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacgacgttcatgtcggtctctgcagcagagtcgtcaacgaattcc                                                           >  1:237899‑M1/1‑58 (MQ=255)
                                                                                      aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtaaacactacaatcataccggactctagggcaaagtcttcaaagtattcca                                                          >  2:421611‑M1/1‑57 (MQ=255)
                                                                                         ataaggCGACTCATCAGTCGGGTTAAAGAGCAGATCGGCGGCGCCTCGTCCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  2:328270‑M1/141‑90 (MQ=255)
                                                                                                 atccatcagtcGCCTTAAAAATCAGTTTGCCTGCGCCACCTTCTGCcgtcccctgcacttcattgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatttcagatcgcaaacc                                               <  1:93318‑M1/140‑98 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGACTTCTGCcgtcccctgcacttcaatgatgcgcccgtcatcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaacgcaacgcc                                       >  1:28179‑M1/1‑38 (MQ=255)
                                                                                                          tCGCCATAAAAAGCAGTGTGCCAGCGCCGCCTTCTGCcggcgcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg                                      <  2:690338‑M1/143‑107 (MQ=255)
                                                                                                                 aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcatttctatgattcgcccgtcttcgttcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa                               <  2:265995‑M1/143‑114 (MQ=255)
                                                                                                                  aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctgcggcagagcctccaacgtactccagcccgcaaaccccttcgccgtccacaat                              >  1:490615‑M1/1‑29 (MQ=255)
                                                                                                                       cAGTTTGCCAGCGCCCCTTTCTGCcgtctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  1:189418‑M1/143‑120 (MQ=255)
                                                                                                                          tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcagtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacag                      >  2:376062‑M1/1‑21 (MQ=255)
                                                                                                                            tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctccggtcatcactacgttcatgacggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgctcacaattacgccagaa                    >  1:296328‑M1/1‑19 (MQ=255)
                                                                                                                              ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacacttccgacagaaac                  >  1:456515‑M1/1‑17 (MQ=255)
                                                                                                                                  cgccgcCTTCTGCcgtcgcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg              <  1:612193‑M1/143‑131 (MQ=255)
                                                                                                                                     cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggct           <  2:591892‑M1/143‑134 (MQ=255)
                                                                                                                                     cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgctcatgtcggtctctgcggcagagtcttcaacgtattacagatagcaaaccacttagccgatcacaattccgacagaaactgcggat           >  2:677540‑M1/1‑10 (MQ=255)
                                                                                                                                         ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagagcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacca       <  2:71595‑M1/143‑138 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  2:601738‑M1/1‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: