| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 42 [0] | [0] 41 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 36 (0.960) | 32/264 | 0.1 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC > NC_000913/3815715‑3815999 | accacctGCTTGCTAAGCGCAACTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCCCATCGTACTTCTCTACAGACAAAAAACAGTCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC < 1:568953‑M1/141‑1 (MQ=255)aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC < 1:314170‑M1/143‑1 (MQ=255) ggcttgctaGCCTCTAGTTTAATACACTGGCCCTGGTGTGGTTTCATGCCTTCGCTCCTGATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCcgtccc < 1:554402‑M1/142‑7 (MQ=255) tgctAAGCGCAAATCCAATAAACTGGCGCTGATATGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc < 2:611076‑M1/143‑11 (MQ=255) tAAGCGCAAAGTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtcccctgcaat < 1:398563‑M1/143‑14 (MQ=255) aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGACGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctcgtctt > 2:187805‑M1/1‑129 (MQ=255) aaGCGCAAAATTACGAAACTGGCGAGAATATAGATACAAGCCGTCGCTCCTCATCTTACTTATCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt < 2:146149‑M1/143‑15 (MQ=255) aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAGAAAAAAGGCGACTCATCAGTCGCCTTACAAACACGTTTCCCAACGCCGCCTTCTGCcggcccctgccctcg > 2:491898‑M1/1‑128 (MQ=255) ctcaaATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 1:719991‑M1/141‑18 (MQ=255) cgtaaattcAATAAACTGACGCTGATATGGTTGCAGGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 2:88101‑M1/140‑18 (MQ=255) actggacttcactggcgctgtTATGGTTTTATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat < 1:620443‑M1/133‑22 (MQ=255) aaTTGAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat < 1:330128‑M1/143‑22 (MQ=255) aTTCAATAACCTGGCGCTGATATGGTTTCATGCCTTCGCACCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg < 2:476394‑M1/143‑23 (MQ=255) agcagagatggtgacaTGCCTTCGCTCCACCTCTTACTTTTCGACAGACAAAAAAAAGGCGACTCATCAGTCGTCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgacccctgcacttcaatgatgcgcccgtcttcggt < 2:287345‑M1/136‑37 (MQ=255) ggttgatgtctTCGGTCTTCATCTTATGTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAATTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg < 1:204870‑M1/138‑47 (MQ=255) gCTCCTCATCTTATTTTTCTACATACTAAAAATAGGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct < 2:341959‑M1/143‑60 (MQ=255) gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactaagatcatgacggtct > 1:417161‑M1/1‑84 (MQ=255) gccctcagATTACTTTTCTACAGACAGAAAAAATGCGTCTCTTCAGTCGCCTTAAAAATCATTTTGCTAGCCCCGCCTTCTGCcgtcccctgcacttcaatgatgcgctcgtcttcggtcatcactacgttcatgtcggtctc < 1:319882‑M1/141‑61 (MQ=255) ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGACGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgatcatgtcggtctc > 1:234070‑M1/1‑83 (MQ=255) tcctcATCTTACTTTTCTACAGACAAAAAACACGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct < 1:363856‑M1/143‑62 (MQ=255) ttgctacAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCAAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt < 1:683693‑M1/140‑75 (MQ=255) ttacatacaaAAAAAAGGCGATTCTTCAGTCGCTTTAATAATCATTTTGCCAGCGCCGCATTCTGCcggcccctgcactgcaatgatgcgcccggcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa < 2:205416‑M1/142‑78 (MQ=255) cTACAGACAAAAAAAAGGCTACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa < 2:718811‑M1/143‑78 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgttcgctgcacttcaatgttgcgcccgttttcggtcatcactacgttcatgtagtgctccacggcagagacttcacc > 2:146784‑M1/1‑65 (MQ=255) aCAAAAAAAAGGCGACTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaagcgcccctcttcggtcatcactaagttcatgtcggtctctgcggcaaagactccaaacaact > 1:231906‑M1/1‑60 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacgacgttcatgtcggtctctgcagcagagtcgtcaacgaattcc > 1:237899‑M1/1‑58 (MQ=255) aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtaaacactacaatcataccggactctagggcaaagtcttcaaagtattcca > 2:421611‑M1/1‑57 (MQ=255) ataaggCGACTCATCAGTCGGGTTAAAGAGCAGATCGGCGGCGCCTCGTCCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat < 2:328270‑M1/141‑90 (MQ=255) atccatcagtcGCCTTAAAAATCAGTTTGCCTGCGCCACCTTCTGCcgtcccctgcacttcattgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatttcagatcgcaaacc < 1:93318‑M1/140‑98 (MQ=255) gTCGCCTTAAAAATCAGTTTGCCAGCGCCGACTTCTGCcgtcccctgcacttcaatgatgcgcccgtcatcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaacgcaacgcc > 1:28179‑M1/1‑38 (MQ=255) tCGCCATAAAAAGCAGTGTGCCAGCGCCGCCTTCTGCcggcgcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg < 2:690338‑M1/143‑107 (MQ=255) aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcatttctatgattcgcccgtcttcgttcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa < 2:265995‑M1/143‑114 (MQ=255) aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctgcggcagagcctccaacgtactccagcccgcaaaccccttcgccgtccacaat > 1:490615‑M1/1‑29 (MQ=255) cAGTTTGCCAGCGCCCCTTTCTGCcgtctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga < 1:189418‑M1/143‑120 (MQ=255) tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcagtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacag > 2:376062‑M1/1‑21 (MQ=255) tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctccggtcatcactacgttcatgacggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgctcacaattacgccagaa > 1:296328‑M1/1‑19 (MQ=255) ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacacttccgacagaaac > 1:456515‑M1/1‑17 (MQ=255) cgccgcCTTCTGCcgtcgcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg < 1:612193‑M1/143‑131 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggct < 2:591892‑M1/143‑134 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgctcatgtcggtctctgcggcagagtcttcaacgtattacagatagcaaaccacttagccgatcacaattccgacagaaactgcggat > 2:677540‑M1/1‑10 (MQ=255) ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagagcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacca < 2:71595‑M1/143‑138 (MQ=255) ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct > 2:601738‑M1/1‑1 (MQ=255) | AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC > NC_000913/3815715‑3815999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |