| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 42 [0] | [0] 41 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 36 (0.960) | 32/264 | 0.1 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT > NC_000913/3815803‑3816082 | ggcttgctagcctctagtttaatacactggccctggtgtggtttcatgccttcgctcctgatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatctgtttgccagcgccgccttctgcCGTccc < 1:554402‑M2/6‑1 (MQ=255) tgctaagcgcaaatccaataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc < 2:611076‑M2/10‑1 (MQ=255) taagcgcaaagtcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttccgcCGTCCCCTgcaat < 1:398563‑M2/13‑3 (MQ=255) aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagacgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCgtcccctcgtctt > 2:187805‑M2/130‑137 (MQ=255) aagcgcaaaattacgaaactggcgagaatatagatacaagccgtcgctcctcatcttacttatctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt < 2:146149‑M2/14‑1 (MQ=255) agcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacagaaaaaaggcgactcatcagtcgccttacaaacacgtttcccaacgccgccttctgcCGGCCCCTGCcctcg > 2:491898‑M2/129‑141 (MQ=255) ctcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa < 1:719991‑M2/17‑1 (MQ=255) cgtaaattcaataaactgacgctgatatggttgcaggccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa < 2:88101‑M2/17‑1 (MQ=255) actggacttcactggcgctgttatggttttatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat < 1:620443‑M2/21‑1 (MQ=255) aattgaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat < 1:330128‑M2/21‑1 (MQ=255) attcaataacctggcgctgatatggtttcatgccttcgcacctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg < 2:476394‑M2/22‑1 (MQ=255) agcagagatggtgacatgccttcgctccacctcttacttttcgacagacaaaaaaaaggcgactcatcagtcgtcttaaaactcagtttgccagcgccgccttctgcCGACCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 2:287345‑M2/36‑1 (MQ=255) ggttgatgtcttcggtcttcatcttatgtttctacagacaaaaaaaaggcgactcatcagtcgccttaaaattcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg < 1:204870‑M2/46‑1 (MQ=255) gctcctcatcttatttttctacatactaaaaataggcgtctcatcagtcgccttaaaaatcagtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct < 2:341959‑M2/59‑1 (MQ=255) gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAAGATCATGACGGtct > 1:417161‑M2/85‑143 (MQ=255) gccctcagattacttttctacagacagaaaaaatgcgtctcttcagtcgccttaaaaatcattttgctagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCTCGTCTTCGGTCATCACTACGTTCATGTCGGtctc < 1:319882‑M2/60‑1 (MQ=255) ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgacgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGATCATGTCGGtctc > 1:234070‑M2/84‑143 (MQ=255) tcctcatcttacttttctacagacaaaaaacacgcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct < 1:363856‑M2/61‑1 (MQ=255) ttgctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgcaagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt < 1:683693‑M2/74‑1 (MQ=255) ttacatacaaaaaaaaggcgattcttcagtcgctttaataatcattttgccagcgccgcattctgcCGGCCCCTGCACTGCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa < 2:205416‑M2/77‑1 (MQ=255) ctacagacaaaaaaaaggctactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa < 2:718811‑M2/77‑1 (MQ=255) tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTTCGCTGCACTTCAATGTTGCGCCCGTTTTCGGTCATCACTACGTTCATGTAGTGCTCCACGGCAGAGACTtcacc > 2:146784‑M2/66‑141 (MQ=255) acaaaaaaaaggcgactcttcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGAAGCGCCCCTCTTCGGTCATCACTAAGTTCATGTCGGTCTCTGCGGCAAAgactccaaacaact > 1:231906‑M2/61‑137 (MQ=255) aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACGACGTTCATGTCGGTCTCTGCAGCAGAGTCGTCAACGAATTcc > 1:237899‑M2/59‑143 (MQ=255) aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTAAACACTACAATCATACCGGACTCTAGGGCAAAGTCTTCAAAGTATTCCa > 2:421611‑M2/58‑143 (MQ=255) ataaggcgactcatcagtcgggttaaagagcagatcggcggcgcctcgtcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt < 2:328270‑M2/89‑1 (MQ=255) atccatcagtcgccttaaaaatcagtttgcctgcgccaccttctgcCGTCCCCTGCACTTCATTGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTTCAGATCGCAAAcc < 1:93318‑M2/97‑1 (MQ=255) gtcgccttaaaaatcagtttgccagcgccgacttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCATCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAACGCAACGcc > 1:28179‑M2/39‑143 (MQ=255) tcgccataaaaagcagtgtgccagcgccgccttctgcCGGCGCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg < 2:690338‑M2/106‑1 (MQ=255) aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCATTTCTATGATTCGCCCGTCTTCGTTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa < 2:265995‑M2/113‑1 (MQ=255) aaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCTGCGGCAGAGCCTCCAACGTACTCCAGCCCGCAAACCCCTTCGCCGTCCACAAt > 1:490615‑M2/30‑143 (MQ=255) cagtttgccagcgcccctttctgcCGTCTCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa < 1:189418‑M2/119‑1 (MQ=255) tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCAGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAg > 2:376062‑M2/22‑143 (MQ=255) tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTCCGGTCATCACTACGTTCATGACGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGCTCACAATTACGCCAGaa > 1:296328‑M2/20‑143 (MQ=255) ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACACTTCCGACAGAAAc > 1:456515‑M2/18‑143 (MQ=255) cgccgccttctgcCGTCGCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg < 1:612193‑M2/130‑1 (MQ=255) cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCt < 2:591892‑M2/133‑1 (MQ=255) cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTACAGATAGCAAACCACTTAGCCGATCACAATTCCGACAGAAACTgcggat > 2:677540‑M2/11‑141 (MQ=255) ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa < 2:71595‑M2/137‑1 (MQ=255) cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt > 2:601738‑M2/2‑143 (MQ=255) cGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGCGTCTTCCACGTATTCCAGATCGCAAACCACTTAGCCGTTCACAATTACGCCAGAAACTGCGGCTACCCTCCCtt > 2:7614/1‑143 (MQ=255) | AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT > NC_000913/3815803‑3816082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |