Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 42 [0] [0] 41 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)36 (0.960) 32/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815803‑3816082
                                                                                                                                         |                                                                                                                                              
ggcttgctagcctctagtttaatacactggccctggtgtggtttcatgccttcgctcctgatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatctgtttgccagcgccgccttctgcCGTccc                                                                                                                                           <  1:554402‑M2/6‑1 (MQ=255)
    tgctaagcgcaaatccaataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                       <  2:611076‑M2/10‑1 (MQ=255)
       taagcgcaaagtcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttccgcCGTCCCCTgcaat                                                                                                                                    <  1:398563‑M2/13‑3 (MQ=255)
        aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagacgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCgtcccctcgtctt                                                                                                                                   >  2:187805‑M2/130‑137 (MQ=255)
        aagcgcaaaattacgaaactggcgagaatatagatacaagccgtcgctcctcatcttacttatctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                   <  2:146149‑M2/14‑1 (MQ=255)
         agcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacagaaaaaaggcgactcatcagtcgccttacaaacacgtttcccaacgccgccttctgcCGGCCCCTGCcctcg                                                                                                                                  >  2:491898‑M2/129‑141 (MQ=255)
           ctcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                                <  1:719991‑M2/17‑1 (MQ=255)
           cgtaaattcaataaactgacgctgatatggttgcaggccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                                <  2:88101‑M2/17‑1 (MQ=255)
               actggacttcactggcgctgttatggttttatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                            <  1:620443‑M2/21‑1 (MQ=255)
               aattgaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                            <  1:330128‑M2/21‑1 (MQ=255)
                attcaataacctggcgctgatatggtttcatgccttcgcacctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                           <  2:476394‑M2/22‑1 (MQ=255)
                              agcagagatggtgacatgccttcgctccacctcttacttttcgacagacaaaaaaaaggcgactcatcagtcgtcttaaaactcagtttgccagcgccgccttctgcCGACCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                             <  2:287345‑M2/36‑1 (MQ=255)
                                        ggttgatgtcttcggtcttcatcttatgtttctacagacaaaaaaaaggcgactcatcagtcgccttaaaattcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                   <  1:204870‑M2/46‑1 (MQ=255)
                                                     gctcctcatcttatttttctacatactaaaaataggcgtctcatcagtcgccttaaaaatcagtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                                      <  2:341959‑M2/59‑1 (MQ=255)
                                                     gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAAGATCATGACGGtct                                                                                      >  1:417161‑M2/85‑143 (MQ=255)
                                                      gccctcagattacttttctacagacagaaaaaatgcgtctcttcagtcgccttaaaaatcattttgctagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCTCGTCTTCGGTCATCACTACGTTCATGTCGGtctc                                                                                     <  1:319882‑M2/60‑1 (MQ=255)
                                                      ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgacgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGATCATGTCGGtctc                                                                                     >  1:234070‑M2/84‑143 (MQ=255)
                                                       tcctcatcttacttttctacagacaaaaaacacgcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct                                                                                    <  1:363856‑M2/61‑1 (MQ=255)
                                                                    ttgctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgcaagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                       <  1:683693‑M2/74‑1 (MQ=255)
                                                                       ttacatacaaaaaaaaggcgattcttcagtcgctttaataatcattttgccagcgccgcattctgcCGGCCCCTGCACTGCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                    <  2:205416‑M2/77‑1 (MQ=255)
                                                                       ctacagacaaaaaaaaggctactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                    <  2:718811‑M2/77‑1 (MQ=255)
                                                                        tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTTCGCTGCACTTCAATGTTGCGCCCGTTTTCGGTCATCACTACGTTCATGTAGTGCTCCACGGCAGAGACTtcacc                                                                   >  2:146784‑M2/66‑141 (MQ=255)
                                                                             acaaaaaaaaggcgactcttcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGAAGCGCCCCTCTTCGGTCATCACTAAGTTCATGTCGGTCTCTGCGGCAAAgactccaaacaact                                                              >  1:231906‑M2/61‑137 (MQ=255)
                                                                               aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACGACGTTCATGTCGGTCTCTGCAGCAGAGTCGTCAACGAATTcc                                                            >  1:237899‑M2/59‑143 (MQ=255)
                                                                                aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTAAACACTACAATCATACCGGACTCTAGGGCAAAGTCTTCAAAGTATTCCa                                                           >  2:421611‑M2/58‑143 (MQ=255)
                                                                                   ataaggcgactcatcagtcgggttaaagagcagatcggcggcgcctcgtcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                        <  2:328270‑M2/89‑1 (MQ=255)
                                                                                           atccatcagtcgccttaaaaatcagtttgcctgcgccaccttctgcCGTCCCCTGCACTTCATTGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTTCAGATCGCAAAcc                                                <  1:93318‑M2/97‑1 (MQ=255)
                                                                                                   gtcgccttaaaaatcagtttgccagcgccgacttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCATCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAACGCAACGcc                                        >  1:28179‑M2/39‑143 (MQ=255)
                                                                                                    tcgccataaaaagcagtgtgccagcgccgccttctgcCGGCGCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                       <  2:690338‑M2/106‑1 (MQ=255)
                                                                                                           aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCATTTCTATGATTCGCCCGTCTTCGTTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa                                <  2:265995‑M2/113‑1 (MQ=255)
                                                                                                            aaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCTGCGGCAGAGCCTCCAACGTACTCCAGCCCGCAAACCCCTTCGCCGTCCACAAt                               >  1:490615‑M2/30‑143 (MQ=255)
                                                                                                                 cagtttgccagcgcccctttctgcCGTCTCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                          <  1:189418‑M2/119‑1 (MQ=255)
                                                                                                                    tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCAGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAg                       >  2:376062‑M2/22‑143 (MQ=255)
                                                                                                                      tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTCCGGTCATCACTACGTTCATGACGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGCTCACAATTACGCCAGaa                     >  1:296328‑M2/20‑143 (MQ=255)
                                                                                                                        ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACACTTCCGACAGAAAc                   >  1:456515‑M2/18‑143 (MQ=255)
                                                                                                                            cgccgccttctgcCGTCGCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg               <  1:612193‑M2/130‑1 (MQ=255)
                                                                                                                               cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCt            <  2:591892‑M2/133‑1 (MQ=255)
                                                                                                                               cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTACAGATAGCAAACCACTTAGCCGATCACAATTCCGACAGAAACTgcggat            >  2:677540‑M2/11‑141 (MQ=255)
                                                                                                                                   ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa        <  2:71595‑M2/137‑1 (MQ=255)
                                                                                                                                        cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt   >  2:601738‑M2/2‑143 (MQ=255)
                                                                                                                                         cGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGCGTCTTCCACGTATTCCAGATCGCAAACCACTTAGCCGTTCACAATTACGCCAGAAACTGCGGCTACCCTCCCtt  >  2:7614/1‑143 (MQ=255)
                                                                                                                                         |                                                                                                                                              
AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815803‑3816082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: