Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,001,644	Δ5 bp	coding (220‑224/951 nt)	corA →	magnesium/nickel/cobalt transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4001644	4001648	5	33 [0]	[0] 33	corA	magnesium/nickel/cobalt transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4001643	0 (0.000)	32 (0.790)	28/284	0.4	100%	coding (219/951 nt)	corA	magnesium/nickel/cobalt transporter
	?	NC_000913	4001649 =	0 (0.000)					coding (225/951 nt)	corA	magnesium/nickel/cobalt transporter

CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGT  >  NC_000913/4001501‑4001778                                                                                                                                               |                                                                                                                                        ctgTATGGATTGTTCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGACCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCat                                                                                                                                         <  1:387877/141‑1 (MQ=255)       tgagtgatcTTGTCGAATCGGACTACGACTAGCGACTGCGTGTACAATCTAAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcctt                                                                                                                                   <  2:544168‑M1/139‑7 (MQ=255)           tGATCGTGCCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttc                                                                                                                               <  2:665687‑M1/143‑11 (MQ=255)                ttGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctt                                                                                                                          >  2:659076‑M1/1‑128 (MQ=255)                 tGTCGGACCGGACGACGATTAGCGACTGCGCGTATAATTTGATCTTGGTCATAGGGTGGCAACCCGCCGGGAACGGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt                                                                                                                         <  2:33613‑M1/143‑17 (MQ=255)                  gTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttg                                                                                                                        <  1:599641‑M1/143‑18 (MQ=255)                     gAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGCACTGGCCGTCATCGATGCATCGGCGCGTTTCTTTGAAGACGAAAACGGCATAAATatccttcttcttaattgaag                                                                                                                     >  2:237527‑M1/1‑123 (MQ=255)                        ctggacGACGACGAGTGACTGCGCGTACATTCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACGGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatg                                                                                                                  <  2:231721‑M1/141‑24 (MQ=255)                              gacgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaag                                                                                                            >  2:593284‑M1/1‑114 (MQ=255)                                           tgtgtgtacaaTCTGAACTTGGTCGGAGCCTGGCAACCCGCCGGGAACTGGAAGACGACGAAGCATCGGCACGGTTCGGTGAAGACGACGACGGCCTGCATcgccttcttcttctttgaagatgcggaagatcacgccggtaa                                                                                               <  2:82874‑M1/138‑43 (MQ=255)                                           tGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACTACGTCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaa                                                                                               >  2:206987‑M1/1‑101 (MQ=255)                                                    aaTCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgt                                                                                      >  1:36493‑M1/1‑92 (MQ=255)                                                      tCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGGCGACGACGGCCTGCATctccttcttcttctttgaagcagcggcagaacacgccggtaactccactgtgg                                                                                    >  1:434901‑M1/1‑90 (MQ=255)                                                          gagtgagtcagaccctgGTAATCCGCTAGGAACTGGAAGACAGCGAAGCATCTGCACGTTTCTTTGAAGACGACGACGGGCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatt                                                                                <  1:665134‑M1/135‑58 (MQ=255)                                                             ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGCAGACGACTACGGCCTGCATctccttcttcttctttgatgatacggaagatcacgcaggtaactcaactaatgcatttac                                                                             >  2:629646‑M1/1‑83 (MQ=255)                                                             ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGACGACGACGACGGCCTGCCTctccttcctcttctttgcagatgcgtaagatcacgccggtaacaacaatgtggaatatac                                                                             >  2:482104‑M1/1‑83 (MQ=255)                                                                       ccTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgat                                                                   <  1:380479‑M1/143‑71 (MQ=255)                                                                          ggCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaaaatcacgccggtaactccactgtggcatttaccatccgtgatggt                                                                >  2:571596‑M1/1‑70 (MQ=255)                                                                                ccgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgcggcatttaccatccgtgctggtcgtccg                                                          >  1:649502‑M1/1‑64 (MQ=255)                                                                                  gccgcggactggaagAGAGCGAAGCAGCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtt                                                        <  2:289674‑M1/136‑82 (MQ=255)                                                                                  gcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtt                                                        >  2:143178‑M1/1‑62 (MQ=255)                                                                                  gcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacaccggtaactacactgtggcatttaccatccgtgatggtcgtccgtt                                                        >  2:391955‑M1/1‑62 (MQ=255)                                                                                           tGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcaagccggtaactccactgtggcatttaccatccgtgatggtcgtctgattactctgcg                                               >  1:684723‑M1/1‑53 (MQ=255)                                                                                              aagatttctaagcatcggcaCGTTTCTTTGAAGACGACGGCGGGCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga                                            <  2:475209‑M1/134‑94 (MQ=255)                                                                                                     cGAAGCATGGGCAGGTTTCTTCTAACACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcatgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                     <  1:279830‑M1/143‑101 (MQ=255)                                                                                                       aaGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaggatcacgccggtaactccactgtggcatttagcatacgtgatggtcggatgtttactctgcgtgagcgtgaact                                   >  2:612299‑M1/1‑41 (MQ=255)                                                                                                            gcgccccggttctttgaagaCGACGACGGCCTGCATctccttcttcttctttgatgatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccg                              <  1:122387‑M1/134‑108 (MQ=255)                                                                                                                     ttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtgtactctgcgtgagcgtgaactgcccgcttttcgtc                     >  1:686263‑M1/1‑27 (MQ=255)                                                                                                                        tttGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctcttcgcctgt                  >  2:691166‑M1/1‑24 (MQ=255)                                                                                                                              gacgacgacGGCCTGCATcttcttctgcttctttgaagatgcggaagatcacgccggtaactccactgtggcctttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta            <  1:329843‑M1/143‑126 (MQ=255)                                                                                                                              gacgacgacGGCCTGCATctccttcttcttctttgaatatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta            <  1:10833‑M1/143‑126 (MQ=255)                                                                                                                                        gCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtctcgtatgcgtgcccg  >  2:390569‑M1/1‑8 (MQ=255)                                                                                                                                        gCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatacgtgatgggcgtctgtttactccgcgtgagcgtgaactgcccgcttttcttcggtactgtgtgcgtgccag  >  1:34041‑M1/1‑8 (MQ=255)                                                                                                                                               |                                                                                                                                        CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGT  >  NC_000913/4001501‑4001778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑