| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 273987 = | NA (NA) | 6 (0.090) | 5/272 | 9.5 | NA | intergenic (+33/+114) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator |
| ? | NC_000913 | 274057 = | NA (NA) | intergenic (+103/+44) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC > NC_000913/273845‑274095 | agggtccactcgcATTCGCAAACGCAGTCGTTATGGCGAGATGCTAGTGGTCTCAACGATCCCGCATGAGAAAGCCAGAAGCTGCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCg < 1:18453/131‑1 (MQ=38) gggCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCgg > 1:527446/1‑143 (MQ=255) ggCACCGGCTCATTCGCAAACGCAGTCGTGATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAGACTCCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGc < 2:749466/143‑1 (MQ=255) gCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTAGGCt > 2:1183292/1‑143 (MQ=255) gCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACCGTTATGGAAGGTGCGAATACGCGGGGAACTTCTT‑CTCGGCt > 1:643315/1‑143 (MQ=255) ttCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTACGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGtcat > 1:452828/1‑143 (MQ=255) ttCGCAAACCATGTCGTGAGGGCGAGTTGCCAGTGGTCTCAACGATGCCGCAGGAGAAGGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGtcat < 1:860917/143‑1 (MQ=25) gCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGtcatttc > 1:784076/1‑143 (MQ=255) aaCGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTGATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGtcgtttcagt > 1:952025/1‑141 (MQ=255) gCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATttct > 2:870533/1‑143 (MQ=255) tggTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGGCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATttctt < 1:406279/141‑1 (MQ=255) aGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATttcttc > 1:1062668/1‑143 (MQ=255) gTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGt < 1:521177/143‑1 (MQ=255) aTGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg < 2:541145/143‑1 (MQ=255) cggCGAGATTCGAGTCGTCTCAACGCCCCCCCAGGAGAAATCAAAAAACTTCTCCGCATCGCTGACAGCACTGTTATGGAACGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa < 1:1077442/142‑1 (MQ=21) ggCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg > 2:662112/1‑143 (MQ=255) tGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt > 2:1096326/1‑143 (MQ=255) gAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGCTTGAGCCGAtttttt > 1:153481/1‑143 (MQ=255) gAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACACAGTCATGTCATTTCTTCATGTTCGAGCCGAtttttt > 1:506430/1‑143 (MQ=255) aGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc < 2:1173917/143‑1 (MQ=255) ggggTCTCAACGATCCCGGAGGAGCAAGCGAGACTTATAGGCTAAAGGTGGACTGCACTGTTCTGGACGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct < 2:1235492/141‑1 (MQ=2) gTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATACTT‑CTCGGCTGACTCAGTCATCTCATTTCTTCATCTTTGAGCCGGTTTTTtct > 1:463544/1‑143 (MQ=255) tGGTCTGAGCGATCCCGCAGGAGAAAGCCGGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGCTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc < 1:1230194/143‑1 (MQ=255) gggTCTCAACGAGCCGGCAGGGGAAAGCCAGAACCTTCGCCGCATCGCTGACAGCACTGTTATGGGAGGTGCGTATCAGCGGGGAAATTCTG‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc < 1:1140715/142‑1 (MQ=21) gtgtcgatgttCCCGCGGGAGATAGCGAGATACTTCGCCGCTTCGCTGACCTCACTGTTATGGATGGGTTGAAGAGGCGGTGAAATTCTT‑CTCGGCTTACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTccc < 1:230000/133‑1 (MQ=12) gTCTCAACGATCCCGCAGGAGAAAGCTAGACACATAGTCGCATTGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTGCTccc < 1:672521/143‑1 (MQ=18) gTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc < 2:1205027/143‑1 (MQ=255) tctcAACGATCCCGCAGGGGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg < 1:857540/143‑1 (MQ=255) ctcAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt > 2:596060/1‑143 (MQ=255) cAACGATCCCGCAGGAGAAAGCCAGAAACTTCACCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCCTTTCTTCATGTTTGAGCCGATTTTTCCTCCCGTaa > 1:652248/1‑143 (MQ=255) tCCCGCCGGAGAAAGCCAGAAACGTCGCCGCATCGCTGACAGCACTGTTAGGGAAGGTGCGAATAAGCGGGGAAATGCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt < 2:241115/143‑1 (MQ=255) cAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt < 2:264993/143‑1 (MQ=255) agaAAGCCAGAAACTTCGCCGCAGCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc < 2:784076/143‑1 (MQ=255) aGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt > 2:460202/1‑143 (MQ=255) ccAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt > 1:1202232/1‑143 (MQ=255) cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGTGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa < 2:704075/143‑1 (MQ=255) cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa < 2:257165/143‑1 (MQ=255) cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCAATTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa > 2:979418/1‑143 (MQ=255) aaGAAACCTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa < 2:1005725/142‑1 (MQ=255) aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct < 2:324585/113‑1 (MQ=255) aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct > 1:324585/1‑113 (MQ=255) aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg > 2:1045255/1‑143 (MQ=255) aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg > 2:527204/1‑143 (MQ=255) gAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATCTCATTTCTTCATGTTTGAGCCGATTTTTTGTCCCGTCAATGCCTTGAATCAGCCTATCTAGa > 1:900762/1‑143 (MQ=255) acacgtcgcccgctCGCGGACAGCACGTTGATGGGGGGTGCGTAGAATCGGGGAAAGTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc < 2:339629/130‑1 (MQ=11) aaaCTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTG‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc < 1:435802/143‑1 (MQ=255) ttCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTCCTTCATGTTTGAGCCGGTTTTTTCTCCCGTCACTGCCTTGGATCAGCCTATTTAGACCGtg > 1:796614/1‑142 (MQ=17) ttCGCCGCATCGCTGACAGCACGATAATGGAAGGTGCGAATAAGCGGGGAAAATCTT‑CTCGGCTGAATCAGACATTTCATTTCTTCATGCTTGAGCCGATTTTTTACCACGAAAATGCCTGAAAACAGcccactaacacagca > 1:988471/1‑130 (MQ=9) tCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt < 1:662112/143‑1 (MQ=255) cTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTATTCCACAACCATATAGGTGATTT‑GTTACGGTATGGAGGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt > 2:289697/1‑143 (MQ=2) gACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa > 2:526561/1‑143 (MQ=38) aGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTAAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCCATTTAGACCGTTTCTTCGCCATTTagtgc > 1:284415/1‑139 (MQ=255) gCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg < 2:527446/143‑1 (MQ=34) cACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTCTCTTCGCCATTTAAGGCGt > 2:400683/1‑143 (MQ=18) tGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTACGGCGTTAt > 1:524617/1‑143 (MQ=17) ttATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc < 2:746599/143‑1 (MQ=32) aTGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc < 2:399895/143‑1 (MQ=31) | GGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC > NC_000913/273845‑274095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |