New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	273987 =	NA (NA)	6 (0.090)	5/272	9.5	NA	intergenic (+33/+114)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator
	?	NC_000913	274057 =	NA (NA)					intergenic (+103/+44)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

AGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC  >  NC_000913/273917‑274095                                                                                                                                              |                                       aGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                      >  2:460202/1‑143 (MQ=255)   ccAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                    >  1:1202232/1‑143 (MQ=255)    cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGTGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                   <  2:704075/143‑1 (MQ=255)    cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                   <  2:257165/143‑1 (MQ=255)    cAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCAATTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                   >  2:979418/1‑143 (MQ=255)    aaGAAACCTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                   <  2:1005725/142‑1 (MQ=255)     aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg                                  >  2:1045255/1‑143 (MQ=255)     aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg                                  >  2:527204/1‑143 (MQ=255)      gAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATCTCATTTCTTCATGTTTGAGCCGATTTTTTGTCCCGTCAATGCCTTGAATCAGCCTATCTAGa                                 >  1:900762/1‑143 (MQ=255)       acacgtcgcccgctCGCGGACAGCACGTTGATGGGGGGTGCGTAGAATCGGGGAAAGTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc                                <  2:339629/130‑1 (MQ=11)       aaaCTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTG‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc                                <  1:435802/143‑1 (MQ=255)           ttCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTCCTTCATGTTTGAGCCGGTTTTTTCTCCCGTCACTGCCTTGGATCAGCCTATTTAGACCGtg                            >  1:796614/1‑142 (MQ=17)            tCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                           <  1:662112/143‑1 (MQ=255)                       cTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTATTCCACAACCATATAGGTGATTT‑GTTACGGTATGGAGGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt                >  2:289697/1‑143 (MQ=2)                         gACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa              >  2:526561/1‑143 (MQ=38)                            aGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTAAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCCATTTAGACCGTTTCTTCGCCATTTagtgc           >  1:284415/1‑139 (MQ=255)                             gCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg          <  2:527446/143‑1 (MQ=34)                              cACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTCTCTTCGCCATTTAAGGCGt         >  2:400683/1‑143 (MQ=18)                                 tGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTACGGCGTTAt      >  1:524617/1‑143 (MQ=17)                                   ttATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc    <  2:746599/143‑1 (MQ=32)                                     aTGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc  <  2:399895/143‑1 (MQ=31)                                                                                                                                              |                                       AGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTT‑CTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC  >  NC_000913/273917‑274095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.