New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	3 (0.040)	71 (1.010)	62/278	0.1	96.0%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

CTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607872‑608148                                                                                                                                               |                                                                                                                                          cTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATaa                                                                                                                                        >  2:97391/1‑143 (MQ=255)  tgtgTTTAACGGTGCTGGCATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAg                                                                                                                                       <  2:456693/143‑1 (MQ=255)   gtgtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATCTTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGCAATCCCATAAgc                                                                                                                                      >  1:1163369/1‑143 (MQ=255)   gtgtTTAACGGTGATGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTGTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGGCGTTGTGCTGCGAGGAATACCagcaga                                                                                                                                      >  1:961155/1‑138 (MQ=255)    tgttttcctcggCTGGGATTCGCGCTTCTGGTCGCAGACTCGCTGTGTGGGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAgcg                                                                                                                                     <  1:729249/132‑1 (MQ=255)     gtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGATTACGGTGAAGGGACGTAATATTGAGGTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AACTCGCCGTTGTGCGGGGAGTTATCGCATAAgcac                                                                                                                                    >  1:731915/1‑141 (MQ=255)      tctAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGGGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTCGTGGGAGTAATCCCAGCAGCGCt                                                                                                                                   >  1:478786/3‑143 (MQ=255)       ttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGGGTTTACGGTGAAGGAACGTCACATCGCGTTT‑CAGGCTGTTCTCGGTTACGAACCGAAG‑‑AAGGAGCCGTTGTGCGGGGAGCAATCCCATAAgcgcga                                                                                                                                  >  1:744764/1‑141 (MQ=255)         agcGGTACTGGGATTGACGCGCCTGGTCGGAGACTCGCTGTGTGAGTGTACGGTGAAGGAACGTAATATTGAGTTC‑AAGGCTGTTATCGCTTACGAACCGAAG‑‑ACGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAAc                                                                                                                                <  1:1194391/141‑1 (MQ=255)         aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGATGTGCGGGGCGTAATCACCTCAGCGCTAAc                                                                                                                                >  1:355464/1‑143 (MQ=255)          aCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTCATCCCATAAGCGCTAACt                                                                                                                               >  1:1062532/1‑143 (MQ=255)             gggatGGGGTTTACGGTTCGGGTCGGAGACTCGCTGTGTGAGTGTACGGTGAAGGAACGTAATAGTGAGTGT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                            <  1:1136227/139‑1 (MQ=255)              ggCTGGGATTTACGCGTATGGGCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTGT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                                           <  1:46081/142‑1 (MQ=255)                   ggATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtg                                                                                                                      <  2:1227498/143‑1 (MQ=255)                           gCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                              >  2:36763/1‑143 (MQ=255)                           ccTTGTGGTCGGAGCCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGAAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                              <  2:826739/142‑1 (MQ=255)                            cTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑CAGTAGCCGTTGTGCGGGGAGTAATTCCATAAGCGCTAACATAAAGAAAGTGGTAGTAc                                                                                                             >  2:5363/1‑143 (MQ=255)                                 ggTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                                                                                                        >  1:999760/1‑143 (MQ=255)                                 ggTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAAGACTg                                                                                                        >  2:513417/1‑143 (MQ=255)                                     ggAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGCTCTCGCTT‑‑GAGTCGAAGCAAAGGATCTTTTGTGCGGGGAGTAACCGCATCAGCGCTAACTTATGGGTTGCGATGTTGCGGCTGagag                                                                                                    >  1:755980/1‑140 (MQ=255)                                       agaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCCTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa                                                                                                  >  2:925479/1‑143 (MQ=255)                                       agaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa                                                                                                  <  2:400193/143‑1 (MQ=255)                                        gaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                 <  1:97391/143‑1 (MQ=255)                                        gaCTCGCTGTGTGAGTGTACGGTGAAGGAACGGAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                 <  2:490377/143‑1 (MQ=255)                                         ccTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                                <  2:596131/142‑1 (MQ=255)                                          cTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCAGAAGAGAAGGGATTTATCTTATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt                                                                                               >  2:1240172/1‑143 (MQ=37)                                           tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCTTAAGCGCTAACTTAAGGGATGTGGTATTATGCCGGATATgctgaa                                                                                              >  2:163724/1‑138 (MQ=255)                                             gCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATGTGATTTAAc                                                                                            >  2:714724/1‑143 (MQ=255)                                             gCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCGGATATGATTTCAc                                                                                            >  2:453781/1‑143 (MQ=255)                                                 tgtgAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGGTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                                        <  2:1204848/143‑1 (MQ=255)                                                   tgAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGGGGTATTACGCCTGATATGCTTTAACGTGCCg                                                                                      >  2:1207972/1‑143 (MQ=255)                                                     tgTTTGCGGTGAAGGAACGTAATATTGAGTTT‑AAGGCGGTTCGCGCTTACGAACCGAAG‑‑AAGGAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                    <  1:1114348/142‑1 (MQ=255)                                                     aGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                    >  2:750476/1‑143 (MQ=255)                                                      gTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATg                                                                                   >  1:701661/1‑143 (MQ=255)                                                        ttACGGTGAAGGAACTTAATATTGTGTTTGAAGGACG‑ACACGCTTACGAACCGAAG‑‑AAGTAGCAGTCGTGCGGGGAGTAATCCCATAAGCGCTAACTAAACGGATGTGGTAGTCCGCGTGTTATATTTTAACGTACGgaagaa                                                                                 >  1:92942/1‑143 (MQ=255)                                                         tACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                                                >  1:676160/1‑143 (MQ=255)                                                           cGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa                                                                              <  2:809924/143‑1 (MQ=255)                                                                gaGGAACGTAATATTGGGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAAGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc                                                                         <  1:1233837/142‑1 (MQ=255)                                                                  ggAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       >  2:802473/1‑143 (MQ=255)                                                                  ggAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       >  2:1074396/1‑143 (MQ=255)                                                                  cgAACTTAATATTGTGTTT‑AAGGCTGTGCTCGCTTACGAACCTAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGTGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       <  1:1042992/142‑1 (MQ=25)                                                                        tAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AGGGAGCCGTTTTGCGGCCAGTAAATCGATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                 <  2:171339/143‑1 (MQ=21)                                                                        tAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                 >  2:887373/1‑143 (MQ=255)                                                                            atTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGTTCTGAGTGAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                             <  2:858867/143‑1 (MQ=255)                                                                              tGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                           <  2:603240/143‑1 (MQ=255)                                                                              tGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACCACAACTGGTCa                                                           >  2:67296/1‑143 (MQ=255)                                                                                  ttt‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                       >  2:487802/1‑143 (MQ=255)                                                                                        ggcggtgcgcGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                                  <  1:292432/134‑1 (MQ=255)                                                                                                tcGGTTAAGAACCGAAG‑‑GAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCatat                                          <  2:900651/143‑1 (MQ=255)                                                                                                  gCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                        <  2:156287/143‑1 (MQ=255)                                                                                                  gCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                        <  2:488322/143‑1 (MQ=255)                                                                                                  gCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACAGGTCAGCAATTCTGGCCCATATTg                                        >  1:668596/1‑143 (MQ=255)                                                                                                   cTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTGAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTgg                                       <  1:553214/143‑1 (MQ=255)                                                                                                   cTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAGAGTgg                                       >  2:137398/1‑143 (MQ=255)                                                                                                    ttACGGACCGAAG‑‑AAGTAGCCGTGGTGCGGGGAGTAATCCCAGAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                      <  1:226152/143‑1 (MQ=255)                                                                                                    ttACGAACCGAAG‑‑AAGTAGCCGCTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGATGTGGTATTAAGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTAGTCAGCAATTCTGGCCCATCTTGGt                                      >  2:894046/1‑143 (MQ=18)                                                                                                      tccacccGAGG‑‑AAGTAGCCGTTGTGCGGGGAGTAACCCCATAAGCGCTAACTTAAGGGTCGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTaa                                    <  1:1136659/138‑1 (MQ=255)                                                                                                      aCGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTaa                                    >  2:407885/1‑143 (MQ=255)                                                                                                       cGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAg                                   >  1:1097821/1‑143 (MQ=255)                                                                                                        gAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCTATGAATTACGCCCACGATAACTGGTCAGCAATTCTTGCCCATATTGGTAAGc                                  <  2:1125800/143‑1 (MQ=255)                                                                                                        gAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCGATATTGGTaggg                                  >  2:1070697/1‑140 (MQ=255)                                                                                                          aCCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCATTTCTGGCCCATATTGGTAAGccc                                >  2:902497/1‑143 (MQ=255)                                                                                                          aCCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTCAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCCCACGATAACTGGTCAGCAATTCTGGCACATAAGGGTAAGccc                                >  1:671565/1‑143 (MQ=17)                                                                                                                    agTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                        <  2:1062532/143‑1 (MQ=255)                                                                                                                    agTAGCCGCTGTGCGGGGAGTAATCCCAGAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                        <  2:179587/143‑1 (MQ=255)                                                                                                                       aGCCGTTGTGTGGGGAGTAATCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa                     <  1:797246/143‑1 (MQ=255)                                                                                                                         ctgcggcgCGGGCAGTAATCCCATAAGCGTCAACTTAAGGGTTGTGATATTACGCCTGATATGATGTAACGTGCCGATGAATTACTCTCACGATAACTGGTTAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                   <  1:559478/136‑1 (MQ=11)                                                                                                                         ccGTTGTGCGGGGAGTGATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGAGATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                   <  1:615532/143‑1 (MQ=255)                                                                                                                         ccGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                   >  1:172830/1‑143 (MQ=255)                                                                                                                          cGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                  <  2:972885/143‑1 (MQ=255)                                                                                                                           gTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                 >  2:878612/1‑143 (MQ=255)                                                                                                                             tggtcGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTc               <  1:325935/139‑1 (MQ=37)                                                                                                                             gatgCGGGGAGTAAGCCCAGAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTc               <  2:364212/141‑1 (MQ=255)                                                                                                                              gtgCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCg              >  1:551829/1‑143 (MQ=40)                                                                                                                                    ggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATCTTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt        >  1:854331/1‑143 (MQ=25)                                                                                                                                      aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCAGCCCGAAGAACTGGATACTTCGGCACGGaa      >  2:624934/1‑143 (MQ=18)                                                                                                                                         aaTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGCTATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATCCCTCGGCACGTacggc   >  1:1189107/1‑139 (MQ=11)                                                                                                                                          aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGACACTTCGGCACGTGATGcc  >  1:736369/1‑143 (MQ=11)                                                                                                                                               |                                                                                                                                          CTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTT‑AAGGCTGTTCTCGCTTACGAACCGAAG‑‑AAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607872‑608148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.