Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 65 [0] [0] 65 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)62 (0.930) 51/264 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3815999
                                                                                                                                             |                                                                                                                                              
cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCGTTTCTACAGACAAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCTCCGCCTTCTACcg                                                                                                                                              >  1:1153986‑M1/1‑141 (MQ=255)
   cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                           >  2:1006250‑M1/1‑138 (MQ=255)
   cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCATTAAAAATCAGGTTGCCAGCGCCGCCTTCTGCcggcc                                                                                                                                           >  1:104819‑M1/1‑138 (MQ=255)
    tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTGAAAAATCAGTTTGCCAGCGCCGACTTCCGCcggcga                                                                                                                                          >  2:901219‑M1/1‑137 (MQ=255)
     gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                         >  2:826182‑M1/1‑136 (MQ=255)
         gctACGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCGCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  1:633610‑M1/143‑12 (MQ=255)
         gctAAGCGCAAATTCAATAAACTGGCGCCGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTACCAGCGCCGCCTCCTGCcgtcccccgca                                                                                                                                     >  1:546945‑M1/1‑132 (MQ=255)
          ctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGCTTGCCAGCGCCGCCTTCTGCcgtaccctgcaa                                                                                                                                    >  2:1094996‑M1/1‑131 (MQ=255)
              gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                                >  1:298695‑M1/1‑127 (MQ=255)
              gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCAACTTACTTTTATACAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAGAAATCAGATTGCCAGCCCCGCCTTCTCCcgcccccaccactccc                                                                                                                                >  1:697118‑M1/1‑127 (MQ=255)
              gcgaAAATTCAATAACCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACATACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                                <  2:1110881‑M1/143‑17 (MQ=255)
               cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTCCAGACAAAAAAAAGCCGACTCATCAGTCGCCTTACAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctcccctccaa                                                                                                                               >  1:901478‑M1/1‑126 (MQ=255)
               cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCATTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  1:792163‑M1/143‑18 (MQ=255)
                gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcggccccgtcacgtcaat                                                                                                                              >  2:543983‑M1/1‑125 (MQ=255)
                   aaTTCAAAAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  2:274689‑M1/143‑22 (MQ=255)
                    aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          <  1:222098‑M1/143‑23 (MQ=255)
                       cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGATCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtgccctgcacttcaatgatgcgc                                                                                                                       >  2:52122‑M1/1‑118 (MQ=255)
                         aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacatcactgacgcgcc                                                                                                                      >  1:518232‑M1/1‑117 (MQ=255)
                         aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAACGGCGACTCATCAGTCGCCCTAAAAATCAGACTGCCAGCGCCGCCTTCTGCcgccccgcgccctcccatgatacaccc                                                                                                                     >  1:991550‑M1/1‑116 (MQ=255)
                                     tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACACAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                         >  2:1195828‑M1/1‑104 (MQ=255)
                                     tGATATGATTTCATCCCCTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                         <  2:336684‑M1/143‑40 (MQ=255)
                                      gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctccacttgaatgatgcgcccgctttcggctatcc                                                                                                       >  1:1145629‑M1/1‑102 (MQ=255)
                                       atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAGAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       >  2:656990‑M1/1‑102 (MQ=255)
                                       atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCCACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       <  2:850981‑M1/143‑42 (MQ=255)
                                       atatAGTTTCATGCCTTCGCTCCTCCTCGTTCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       <  1:419262‑M1/143‑42 (MQ=255)
                                         atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTCCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     >  2:294320‑M1/1‑100 (MQ=255)
                                           ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTGTGCcgtcccccgcacttcaatgctccgcccgtcttcggtcatcactcc                                                                                                   >  1:1077338‑M1/1‑98 (MQ=255)
                                             tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcaccactacgt                                                                                                 >  1:1234898‑M1/1‑96 (MQ=255)
                                               tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  2:1170408‑M1/143‑50 (MQ=255)
                                                 aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtctacggtcacccctccgttcat                                                                                             >  1:420358‑M1/1‑92 (MQ=255)
                                                   gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  2:977993‑M1/143‑54 (MQ=255)
                                                           tcctccTCTTACTTTTCTACAGACAAGAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacgtcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:32538‑M1/143‑62 (MQ=255)
                                                                   ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           >  1:857032‑M1/1‑74 (MQ=255)
                                                                   ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  2:1051191‑M1/143‑70 (MQ=255)
                                                                     aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcggacgtcttcggtcaccactccgctcatgtcggtctctgcggcagagt                                                                         >  2:169969‑M1/1‑72 (MQ=255)
                                                                       ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                       >  2:451663‑M1/1‑70 (MQ=255)
                                                                         ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc                                                                     >  2:74680‑M1/1‑68 (MQ=255)
                                                                             aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacc                                                                 >  1:92107‑M1/1‑64 (MQ=255)
                                                                             aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactaccttcctgtcggtctctgcggcagagccttcaagg                                                                 >  1:676136‑M1/1‑64 (MQ=255)
                                                                               aGACAAAAAAAAGGCGACTCATCAGTAGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcccaacgttcatggaggactctgcaccagagcccactccgta                                                               >  1:297303‑M1/1‑62 (MQ=255)
                                                                                   cacaaaagacgcGACTCACCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                            <  1:346917‑M1/140‑85 (MQ=255)
                                                                                    aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtaggtctctgcggcagagtcttcaacgtattcc                                                           >  2:226803‑M1/1‑58 (MQ=255)
                                                                                     aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  2:734412‑M1/143‑87 (MQ=255)
                                                                                       gaacaggcgGCTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                        <  1:1168435‑M1/139‑89 (MQ=255)
                                                                                             gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttgcacgtattccagatcgcac                                                  >  1:525459‑M1/1‑49 (MQ=255)
                                                                                             gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcaattcaatgatgcgcccgtcttcggacatcactccgttcatgcggatctctgcggcagagtcgtcaacgtattcccgaatgccc                                                  >  1:907847‑M1/1‑49 (MQ=255)
                                                                                                 cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccg                                              <  1:1006250‑M1/143‑99 (MQ=255)
                                                                                                    atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt                                           <  2:672337‑M1/143‑102 (MQ=255)
                                                                                                     tcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatgccaaatcgcacaccgcttc                                          >  1:630083‑M1/1‑41 (MQ=255)
                                                                                                     tcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc                                          <  2:282665‑M1/143‑103 (MQ=255)
                                                                                                       aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgc                                        >  2:342832‑M1/1‑39 (MQ=255)
                                                                                                           ggcttAAAAAGCATTTCGCCAGCGCCGCCGTCTGCcgcgccctgcacttgaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                    <  1:364069‑M1/141‑109 (MQ=255)
                                                                                                             ccgcaactgcattttgccagcgccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                  <  1:734501‑M1/131‑111 (MQ=255)
                                                                                                               tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtcttccagatcgcaaaccgcttcgccgttcaca                                >  1:884430‑M1/1‑31 (MQ=255)
                                                                                                                 aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgccaaccgcttcgccgttcacgct                              >  1:249773‑M1/1‑29 (MQ=255)
                                                                                                                   aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            <  2:628041‑M1/143‑117 (MQ=255)
                                                                                                                   aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            <  2:1067537‑M1/143‑117 (MQ=255)
                                                                                                                     tCAGCTGGCCTGCGCCGCCTTCTGCcgtcccctgcatttctatgttgttctcgtctttggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccg                          <  2:43870‑M1/143‑119 (MQ=255)
                                                                                                                       ggtgtgccaGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                        <  2:832637‑M1/139‑121 (MQ=255)
                                                                                                                         tttGCCAGCGCCGCCTAAAGAcgtctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgacagagtcttcaacgtcttccagatcgcaaaccgctgcgccgttcacaattccaacag                      >  1:1096913‑M1/1‑21 (MQ=255)
                                                                                                                             ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaac                  <  2:298695‑M1/143‑127 (MQ=255)
                                                                                                                              caacgccgccttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgatcatcactacgttcatgccgatctctgcggcagagtcttcaacgtcttccaattcgcaaaccgcttcgccgtacacaacaccgacagccaca                 >  1:73995‑M1/4‑16 (MQ=255)
                                                                                                                                           tGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    <  2:469113‑M1/143‑141 (MQ=255)
                                                                                                                                           tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc    >  2:380217‑M1/1‑3 (MQ=255)
                                                                                                                                             ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  1:77156‑M1/1‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: