Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 68 [0] [0] 69 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)63 (0.930) 44/268 0.5 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258543‑258826
                                                                                                                                             |                                                                                                                                              
gttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                                                                                                               >  2:834515‑M2/142‑143 (MQ=255)
  gcaaaatttagcaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggccagtatactcgtgaaggtaaggg                                                                                                                                             >  1:94584‑M2/140‑141 (MQ=255)
   caaaatttagcaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                                                                                                                            >  2:97378‑M2/139‑143 (MQ=255)
     aaatttgctaacttttgccaatttggcaaaagagttgcatcacaacaggacatagcaatgacattaacgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                                                                                                                          <  1:523775‑M2/7‑1 (MQ=255)
            ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   >  1:1034660‑M2/130‑143 (MQ=255)
            ctaaattgtgccaatgtggtagaacaggtgcatcacaacaggagatagcaatgacggtaccgagtggacacccgaagagcagattgagcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   <  2:423049‑M2/14‑1 (MQ=255)
             taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  2:564034‑M2/129‑143 (MQ=255)
               aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaattgaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                                <  2:318840‑M2/17‑1 (MQ=255)
                       caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        <  2:1218368‑M2/25‑1 (MQ=255)
                       caatgaggtaaaacagttgcatcacaccaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        <  2:695134‑M2/25‑1 (MQ=255)
                        aactttggacaacggttgcatcccaacaggagatagccatgacggtgcggactggacacccgaagagcagattgatcaacaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                       <  1:563948‑M2/26‑1 (MQ=255)
                          tttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                     >  2:1088547‑M2/116‑143 (MQ=255)
                                aaaactgttgcatcacaacaggagatagcaatgacgttaccgagttgacgcctgaagagcagattgatcaaaaaatttaccgcactgggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                                                                                                               <  1:493301‑M2/34‑1 (MQ=255)
                                aaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCt                                                                                                               >  1:96739‑M2/110‑143 (MQ=255)
                                 aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactatgcccgtatattcgtgaaggtaAGTGCAAAGataatcgattcttttctgactgacga                                                                                                              >  1:132359‑M2/109‑132 (MQ=255)
                                 aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgataaaagagtttaccgcacttggcccgtatttttgtgaaggtaGGTGCATCGTTTATCGATTCTTTTTCGTTtctctc                                                                                                              >  2:23759‑M2/109‑142 (MQ=255)
                                  atcagttggcgcacgacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatgaaataatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                             <  1:552047‑M2/36‑1 (MQ=255)
                                  aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                             >  1:348127‑M2/108‑143 (MQ=255)
                                  aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                             >  2:1119122‑M2/108‑143 (MQ=255)
                                       ttgcatcagaacagaacatagcaatcacgttaccgagcggacacctgaagagcagatggatcaaaatatttacctcactaggctcgtatattcgtgaaggtaAGCGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa                                                                                                        <  2:202834‑M2/41‑1 (MQ=255)
                                            tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt                                                                                                   >  2:120364‑M2/98‑143 (MQ=255)
                                            tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCCGGCTGTATGCGt                                                                                                   >  1:587822‑M2/98‑143 (MQ=255)
                                               caacaggagatggcaatgacgttaccgagtggacacccgaagagcaggttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggcaAGTGCAAAGATAATCGATACTTTTTCGCTTGTTTCGCTggatgcagcac                                                                                                >  2:566855‑M2/95‑138 (MQ=255)
                                                aacatgatatattgatgacgtgacctagtggacacccgaagagcagagtgaacaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                               <  2:99410‑M2/50‑1 (MQ=255)
                                                  caggagatagcaatgacgttaccgagtgtacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                             <  1:819514‑M2/52‑1 (MQ=255)
                                                    gaagagagcaaggcagttatcgagtggccacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa                                                                                           <  2:405008‑M2/54‑1 (MQ=255)
                                                     gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgacggtaAGTGCAAAGATCATCGATTCTTTTTCGATTGTCTGGCTGTATGCGGCAACGTGaa                                                                                          >  2:316316‑M2/89‑143 (MQ=255)
                                                      agatagcaatgacgttaccgagtggatacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa                                                                                         <  2:337859‑M2/56‑1 (MQ=255)
                                                              atgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAcc                                                                                 <  2:442173‑M2/64‑1 (MQ=255)
                                                                  cgttaccgagtggacacccgaagagcagattgatcgaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGaa                                                                             <  2:846538‑M2/68‑1 (MQ=255)
                                                                  cgttaccgagcggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGaa                                                                             <  1:1187187‑M2/68‑1 (MQ=255)
                                                                     taccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgccagcgaatcgg                                                                          >  1:1071068‑M2/73‑137 (MQ=255)
                                                                         gagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTGCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGAAACGGAAGAGCGTg                                                                      >  1:912066‑M2/69‑143 (MQ=255)
                                                                              gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGACGTGCGTGCATTc                                                                 >  2:829888‑M2/64‑143 (MQ=255)
                                                                                cacccgaagagcaggttgagcagaaactgtaccgcgctaggcccgtcgattcgtgaaggtaAGTGCAAAGAGAAGCGGTTCTTTTGCGAGTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                               <  1:21385‑M2/82‑1 (MQ=255)
                                                                                cacccgaagagcagattgatcaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                               <  1:245232‑M2/82‑1 (MQ=255)
                                                                                cacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                               <  1:1088547‑M2/82‑1 (MQ=255)
                                                                                         cggatggtgatcaaaaaactgacagcactagggccgtttagtggtgaaggtaAGTGCAAAGATAAGCGATTCTCTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                      <  1:1123384‑M2/91‑1 (MQ=255)
                                                                                          gcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGCCAACGTGAAACCGGCACCGGAAGTGCGTGAATTctggggcgagcgg                                                     >  2:376389‑M2/52‑137 (MQ=255)
                                                                                           cagcttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGACGTGCGTGAGTTCTCAGGctcgtggg                                                    >  1:1236191‑M2/51‑142 (MQ=255)
                                                                                            agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                   <  2:348127‑M2/94‑1 (MQ=255)
                                                                                             gattgatcacaaaatggtccgcactaggcccgtgtattggtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                  <  2:168912‑M2/95‑1 (MQ=255)
                                                                                              attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGACTTCGGGGGCTGGtggatgg                                                 >  1:779682‑M2/48‑143 (MQ=255)
                                                                                              attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCGGGtggatgg                                                 >  2:261280‑M2/48‑143 (MQ=255)
                                                                                                  atcaaaaaatttaccgcactaggcccgtatattcgagaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGAATAACCGTCACCGGTAGTGCGTAGATTCTGgggctggtggagcgcgct                                             >  2:398275‑M2/44‑136 (MQ=255)
                                                                                                   tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGGTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGGATTCTGGGGCTGGTGGATGGAGCTg                                            >  2:313333‑M2/43‑143 (MQ=255)
                                                                                                   tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTg                                            >  2:240284‑M2/43‑143 (MQ=255)
                                                                                                     aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGGTGGTGGATGGAGCTGGa                                          >  1:360194‑M2/41‑143 (MQ=255)
                                                                                                     aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:174448‑M2/41‑143 (MQ=255)
                                                                                                           tttcccgcactaggcccgtatattcgggaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  2:1169199‑M2/109‑1 (MQ=255)
                                                                                                              accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGTTGGTGGATGGAGCTGGAAGCGCAGGa                                 >  2:631593‑M2/32‑143 (MQ=255)
                                                                                                                cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGcgcagtgat                               >  1:393058‑M2/30‑139 (MQ=255)
                                                                                                                cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAAt                               <  1:476759‑M2/114‑1 (MQ=255)
                                                                                                                cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAAt                               >  2:150881‑M2/30‑143 (MQ=255)
                                                                                                                   actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGTGGCTGGTGGATGGAGCTGGAAGCGCAGGAATccc                            <  1:97378‑M2/117‑1 (MQ=255)
                                                                                                                   actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATccc                            <  2:938348‑M2/117‑1 (MQ=255)
                                                                                                                     taggcgcggatattcgggaaggtaAGTGCAAAGAGAAGCGATTCTTTGGCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGGATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGt                          <  2:918433‑M2/119‑1 (MQ=255)
                                                                                                                      cgggccctatactcgtggagggaAGTGCGAAGATAATCGACTCGTGTCCGATTGTCTCGCTGTATGCGTCAACGTGAAACCGGCACTGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                         <  2:728283‑M2/120‑1 (MQ=255)
                                                                                                                         cccgtatattcgtgaaggtaAGTGCAAAGGTAATCGATTCTTTTTCGATTGTCTGGCTGTATTCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                      <  2:630527‑M2/123‑1 (MQ=255)
                                                                                                                         cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAACCCCGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                      <  2:177278‑M2/123‑1 (MQ=255)
                                                                                                                         agcgtttttgcgtggagggaAGTGCAACGATAATCGCTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTCCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                      <  1:63611‑M2/123‑1 (MQ=255)
                                                                                                                          ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGCCACCGGGCGGGCGTGAATTCTGCGGCTGGTGGCTGGAGCCGGAAGCGCGGGAAtcccgtgtcac                     >  1:1083831‑M2/20‑138 (MQ=255)
                                                                                                                              atattcgtgcaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTAc                 <  2:923043‑M2/128‑1 (MQ=255)
                                                                                                                                         ggtgAGTGCAAAGGTAATCGATTCTTTTTTGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt      <  1:900096‑M2/139‑1 (MQ=255)
                                                                                                                                          gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGCAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAgttc     >  1:260401‑M2/4‑142 (MQ=255)
                                                                                                                                           taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg    <  1:120364‑M2/141‑1 (MQ=255)
                                                                                                                                           taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg    <  2:671770‑M2/141‑1 (MQ=255)
                                                                                                                                            aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGCCACCAAAACAGCGTGAATTCTGGGGCTGGCGCATGGAGCTGGAAGCGCAGGAAACCCGTTTTACCTACAGTTGCCAGATTgg   >  1:44621‑M2/2‑143 (MQ=255)
                                                                                                                                             aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  2:399761/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258543‑258826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: