New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458799	48 (0.630)	35 (0.470)	31/418	NT	42.6%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609347	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

CGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATTCCAGCTAATTATCTGATAG  >  NC_000913/609114‑609576                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        ccacAAAACCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAg                                                                                                                                                                                                                                    <  2:711878/237‑1 (MQ=11)  caataaaTCCCACCATCCCTGGATGTCCCCCCACAAAGGGCCGGTATCGAAAAGAAGAACTAACGCTTTGTGGATAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGTTTCAACCCTTAAGTTAGCGCTTATGGGAGt                                                                                                                                                                                                                                   <  2:43856/234‑1 (MQ=11)        aaccAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATccc                                                                                                                                                                                                                             <  1:419436/237‑1 (MQ=18)              ccATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGGGTAATCCCCGCaa                                                                                                                                                                                                                        >  1:268872/1‑237 (MQ=21)              ccATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCat                                                                                                                                                                                                                        >  1:877211/1‑238 (MQ=34)                                     aagtccgggttcgaaaaaGAAGAATTAAC‑CGTTGTGGAGAATAACCAAAAAT‑GGTCATCTGGAGCT‑TGCAGGTGCCCATGCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCTTCGTCTT‑AACGAGGCACCGCGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGAATTTCCGGTTGTCAGGTCAGGATGGt                                                                                                                                                                                                <  2:611745/225‑1 (MQ=14)                                          ccGGATCCGAAAAGAAGAACTAACTCGTTGT‑GAGGATAA‑CCAAAATGGGTATTCTGGAGCT‑TA‑AGGGGGCCCTTCGGGGGACAAGAACCCTTACAACCTTACAAACGG‑AATTGAAGGACGCCAGGCAACGTCTTAAACGA‑GCACCGAAGCCTCCGCTTCTTCAGAAGGTTCCACCCTTAAGTTAGGGCTTCAGGGGGTAAACCCCCCCAATCCCGTTttcacggaccggtggaaaagga                                                                                                                                                                                          >  2:513847/1‑221 (MQ=2)                                            ggATCCGAAAAGAAGAACTAACTCGTTGGGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGGGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAc                                                                                                                                                                                         <  2:883782/239‑1 (MQ=255)                                            gcttCCGAAAAGAAAACATAACTTGTTGTTGGAAAAAA‑AAAAAAT‑GGTCACCTGGATCT‑TACAGGTGGCCATTCGTGGGACAGATTCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCATCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAc                                                                                                                                                                                         <  2:446406/236‑1 (MQ=17)                                                             ccaactCTGTGGGGAGAAAAA‑CAAAAAT‑GGT‑ACGTGGGGATCTACCGGGGGCCATTGGTGGGACAGTATCCCTGACAGCCTACAAAGCGC‑AATTGAAGAACTCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCTCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGc                                                                                                                                                                        <  2:242500/237‑1 (MQ=18)                                                                actCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCg                                                                                                                                                                     >  1:668734/1‑239 (MQ=255)                                                                     ttGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGGGTAATCCCCGCAAATCCGGTTTTCAGGCCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGGGGTc                                                                                                                                                                >  1:431997/1‑239 (MQ=255)                                                                            gaATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGCCAGGTTGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATg                                                                                                                                                         >  1:49806/1‑239 (MQ=255)                                                                               tAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATg                                                                                                                                                         >  1:253284/1‑236 (MQ=255)                                                                                        aT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑Ga                                                                                                                                             >  1:148618/1‑239 (MQ=255)                                                                                        aT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑Ga                                                                                                                                             >  1:38472/1‑239 (MQ=255)                                                                                            gTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTAAACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATc                                                                                                                                          >  1:428955/1‑239 (MQ=255)                                                                                                            cAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGa                                                                                                                                  >  1:586729/1‑232 (MQ=255)                                                                                                            cAGGTGGCCATTCGTGGGACAGGATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGa                                                                                                                                  <  2:586729/232‑1 (MQ=255)                                                                                                               gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCTTGGTCAGTGCTGGCTGCGGCC‑GAATCGACCCAAATGTTGTCatt                                                                                                                        >  1:635133/1‑237 (MQ=255)                                                                                                                  gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACCCTTCCGCCCGTGGTCCGGGTTGGC‑GCGGGCGGAAAGGTACCAGAGGTTGTCAATTaa                                                                                                                     >  2:54273/1‑239 (MQ=18)                                                                                                                    ctttCGTGGGGCAGTATCCCTGACACCCTAAAAAACGA‑AATTGAAGAACGCGAGCCATCGCCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAAt                                                                                                                    <  2:428955/236‑1 (MQ=255)                                                                                                                    ctttCGTGGGACATTATCCCTG‑CAGGCATAAAAATGCGAATTGGAGAACGCGAGGCATCGTTTT‑AACGAGGCACCGGGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAAt                                                                                                                    <  2:49806/236‑1 (MQ=25)                                                                                                                             gACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAAt                                                                                                                                           <  1:449194/206‑1 (MQ=255)                                                                                                                              acattttCCCGGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGca                                                                                                          <  2:668734/232‑1 (MQ=255)                                                                                                                                 gTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGACCAGc                                                                                                      >  1:21076/1‑239 (MQ=255)                                                                                                                                 gTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCAACTCATTCTTCAGATGGTTCAACCCTTAAGTTACCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAGGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTGAGTGAGGGCTGCGGGC‑GAACCGTCCCAGATGTTGGAAATTAAACGGGTTGGCACAGc                                                                                                      >  2:346360/1‑239 (MQ=25)                                                                                                                                  tATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGAGGTTGTCAATTAATCGTGTTGGCACAGCg                                                                                                     >  1:83845/1‑239 (MQ=255)                                                                                                                                   aTCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcac                                                                                                         <  1:96337/234‑1 (MQ=255)                                                                                                                                   aTCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGt                                                                                                    >  1:565018/1‑239 (MQ=255)                                                                                                                                   aTCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGt                                                                                                    <  2:253284/239‑1 (MQ=255)                                                                                                                                    tCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGGGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGtt                                                                                                   >  1:423405/1‑239 (MQ=255)                                                                                                                                            aGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGAtgttg                                                                                                                             <  2:531034/205‑1 (MQ=255)                                                                                                                                            aGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGAtgttg                                                                                                                             >  1:531034/1‑205 (MQ=255)                                                                                                                                            aGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAt                                                                                           >  1:826675/1‑239 (MQ=255)                                                                                                                                              ccTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAAt                                                                                                                                           <  2:699902/189‑1 (MQ=255)                                                                                                                                              ccTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAAt                                                                                                                                           >  1:699902/1‑189 (MQ=255)                                                                                                                                                  aaaaaCGA‑AATTGAAGAACGGGAGGCATCGTCTT‑AACGGGGCACAGGGGCGGCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttttc                                                                                     <  2:473938/238‑1 (MQ=255)                                                                                                                                                               gaagaaCGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGGTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCa                                                                         <  1:779279/239‑1 (MQ=255)                                                                                                                                                                    aCGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑ca                                                                   <  1:54273/239‑1 (MQ=255)                                                                                                                                                                     cgcgAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGTTGTTGTCAATTAATCTTGTTGGCCCAGCGTTATGACTATCTTTTCTTTTATTTGCCAGTT‑cac                                                                  >  1:402568/1‑239 (MQ=255)                                                                                                                                                                                gTCTT‑AACGAGGCACCGAGGCGTCGCATTCGTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACAtct                                                       <  1:687400/239‑1 (MQ=255)                                                                                                                                                                                     ttaCGGGGCCCCGAGGGCTCGCATTCTTCATGTGGTTCAACCCTTAAGGTAGCGCTTAGGGGAGTAATCCCCGCATTGCCGGTTGGCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTTGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCAtt                                                   <  2:877211/237‑1 (MQ=255)                                                                                                                                                                                            ggccccgggcgcagCATTTTTCAGATGTTTCAACCCTTAAGTGAGGGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGGAAGGATGGCAAGGCACCGGCTTTACACTGTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACg                                             <  2:565018/225‑1 (MQ=255)                                                                                                                                                                                            gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAAt                                                                                                                    >  1:534656/1‑168 (MQ=255)                                                                                                                                                                                            gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAAt                                                                                                                    <  2:534656/168‑1 (MQ=255)                                                                                                                                                                                              aCCGAGGGGTCGCATTCTTCAGATGGTTAAACCCGTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGat                                           <  1:332648/238‑1 (MQ=255)                                                                                                                                                                                                  gggCGTCGCTTTTTTCAGTTTGTTTAACCCTTAAGTTAGCGCTTATGGGGATAATCCCCGCATATCCGGTTTTCAGGTCAGGATGGTAAGGCCCCTGCTTTACCCTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑TAATCGTACCAGATTTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGatgaatg                                      <  2:423405/238‑1 (MQ=255)                                                                                                                                                                                                  aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCTCCGCATATCCGGTTGTCAGGTCAGGATGGAAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGGGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCAACGCGTTAAGACACTCTTTTCTTTTATCTGCACGTGTCACATCACA‑ATCTCATTCTCACgcttgttg                                      >  1:860492/1‑232 (MQ=255)                                                                                                                                                                                                      gTCGCATTTTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAAGCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAatgatg                                   <  1:287658/238‑1 (MQ=255)                                                                                                                                                                                                       tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtca                                                                                                                                                                                                       <  1:727942/75‑1 (MQ=255)                                                                                                                                                                                                       tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtca                                                                                                                                                                                                       >  2:727942/1‑75 (MQ=255)                                                                                                                                                                                                       tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAAtgatga                                  >  1:532473/1‑238 (MQ=255)                                                                                                                                                                                                          cATTTTTCAGATTGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACctg                              <  2:826675/239‑1 (MQ=255)                                                                                                                                                                                                                         tCAACCCTTAAGTTAGCGCTTATGGGGGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATTCCAGCt               <  2:38472/239‑1 (MQ=255)                                                                                                                                                                                                                         tCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑Gaa                                                                                                                                            >  2:105308/1‑115 (MQ=255)                                                                                                                                                                                                                         tCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑Gaa                                                                                                                                            <  1:105308/115‑1 (MQ=255)                                                                                                                                                                                                                              ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCATGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcac                                                                                                         <  1:681899/145‑1 (MQ=255)                                                                                                                                                                                                                                  aaGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGAACAGCGTTATGACTATCTTTTCTTTTATCTGCCCGTG‑CACAGCAAACATCTCATTCTCACGACGAATAATGACCTGGTGTTTATTCCAGATAATTAACTg      >  2:640579/1‑239 (MQ=255)                                                                                                                                                                                                                                       aGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCACTTAATCGTGTTGGGACAGCGTTATGGCTATCTTTTCTTTTAACTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATTCCAGCTAATTACCTgcaag  >  1:418587/1‑234 (MQ=255)                                                                                                                                                                                                                                       aGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATTCCAGCTAATTATCTGATAg  >  2:160080/1‑238 (MQ=255)                                                                                                                                                                                                                                       aGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGGTGGCACAGCGTTATGCCTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGTTGATTGATGACCTGCTGTTTATTCCAGCTaataattcgttag  >  1:891084/1‑231 (MQ=255)                                                                                                                                                                                                                                        gcgcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttttctt                                                                                   <  1:689704/157‑1 (MQ=255)                                                                                                                                                                                                                                        gcgcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttttctt                                                                                   >  2:689704/1‑157 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        CGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAA‑CAAAAAT‑GGTCATCTGGAGCT‑TACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGC‑AATTGAAGAACGCGAGGCATCGTCTT‑AACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGC‑GAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTG‑CACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATTCCAGCTAATTATCTGATAG  >  NC_000913/609114‑609576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.