| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,411,925 | Δ23,060 bp | [ttcA]–[ttcC] | 33 genes [ttcA], intR, ydaQ, ydaC, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, [ttcC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1411925 | 1434984 | 23060 | 60 [0] | [1] 61 | [ttcA]–[ttcC] | 33 genes [ttcA], intR, ydaQ, ydaC, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, [ttcC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1411924 | 0 (0.000) | 48 (1.190) | 43/232 | 0.0 | 100% | coding (25/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | 1434985 = | 0 (0.000) | pseudogene (24/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication,Phage or Prophage Related | |||||
GCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACC > NC_000913/1411783‑1412062 | gCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTa < 1:370364‑M1/143‑2 (MQ=255) cATCGTCTAGCTGTCTCGTCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTac < 2:686583‑M1/143‑3 (MQ=255) aTGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTTTTact > 1:449256‑M1/1‑140 (MQ=255) gTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaat < 2:762658‑M1/143‑7 (MQ=255) tataGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGGTCAGGTTGTATTGTTCTTTCTTactaatt > 1:342673‑M1/1‑136 (MQ=255) taGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttc < 1:297576‑M1/143‑10 (MQ=255) ttACCCCCGGAGAGGCAAACCCTGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGTCGCAGTCGTTTTTGTATTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttg < 2:847337‑M1/143‑19 (MQ=255) gtaCTCCCGTAGAGGCAAACCATGATGCGGTCGCCTTCTTCGATCGTAGTGAAGTCAGCTATGGCTTCGCCCACGTTACGACGCAGTCGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttg < 2:789974‑M1/142‑19 (MQ=255) aCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGCAGAAGACTTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcg > 2:98892‑M1/1‑123 (MQ=255) ccGGATAGGCAAACCATGATGCTATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacat < 1:48279‑M1/143‑25 (MQ=255) agagGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttac > 2:170297‑M1/1‑115 (MQ=255) gCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAAGTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagc > 2:85915‑M1/1‑111 (MQ=255) aaaCCGTGATGCGATCGCCTTCTTCAAGCATATTGAAGTCAGCAATGGCTTCGGCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga < 2:398675‑M1/143‑35 (MQ=255) aaaCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga > 1:826097‑M1/1‑109 (MQ=255) aaaCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga < 2:756981‑M1/143‑35 (MQ=255) gatgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGGATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaatt < 1:613602‑M1/143‑42 (MQ=255) atgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGAAGTTGTTAATTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactccattc > 2:836165‑M1/1‑101 (MQ=255) atgCGATCGCCTTCTTCAATCATATTCAAGTCAGCAATGGCTTCGCCCACGTTACGTCGCAGACGTTTTTGTAATTTGTTCTGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattc < 2:373083‑M1/143‑43 (MQ=255) tgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcg > 1:649083‑M1/1‑100 (MQ=255) gATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgtta < 2:174185‑M1/143‑47 (MQ=255) cGCCTTCTTCAATCCTATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatat < 1:787541‑M1/143‑50 (MQ=255) ctttttCAATCATATGAAAATCACCAATAGCTGCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggc < 1:788049‑M1/143‑53 (MQ=255) cttcttCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATCGTTCTTTCTTactaatttctagacttaacaacttttaatggcgactcaattcgttatatggc > 1:432293‑M1/1‑91 (MQ=255) tcttcAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactactatcttgatctttcgacatttaaaagcgactcaattcgttatcttgcat > 2:376012‑M1/1‑89 (MQ=255) ttcAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatca > 1:634535‑M1/1‑87 (MQ=255) ttcAACCATATGGAAGTCAGCAAGGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatca < 1:28134‑M1/143‑57 (MQ=255) aaTCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaa < 2:155823‑M1/143‑60 (MQ=255) ttGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatg > 1:858233‑M1/1‑77 (MQ=255) ttGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagaggatg > 2:612856‑M1/1‑77 (MQ=255) aGCTATGGTTTTTCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgc < 1:530066‑M1/143‑75 (MQ=255) aGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgaatcaattcgttatattgcgtcagaagagagtgcacaatgc > 2:701786‑M1/1‑69 (MQ=255) gCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgcc > 2:390485‑M1/1‑68 (MQ=255) ttCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTGGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatccgacgtttgttcgtcatgccggaacgcc > 2:555034‑M1/1‑60 (MQ=255) gCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccag > 1:514378‑M1/1‑57 (MQ=255) cccACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagc > 1:646006‑M1/1‑56 (MQ=255) cACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatgtcatcagaagagtatgcgtcatgccggaacgcccagcat > 2:251220‑M1/1‑54 (MQ=255) cggtacggggcagacgcttTTGGAATGTGTTCAGGTTGCATTGTTCTTTCGTactaatctcttgatcttgcgacattttaaagcgactcaatccgttatatggcatcataagagtatgcgtcatgccggaacgcccagcataa < 1:192223‑M1/134‑92 (MQ=255) acgacgCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaa > 1:806182‑M1/1‑48 (MQ=255) gccgcaGACGGTTTTGTAATTTGTTCTGGTGTTATTGTTCTTTCTTactaatttcttgtttttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatc < 2:817125‑M1/141‑98 (MQ=255) gTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggatcgccgagcctaagaaatctggtataac > 2:491485‑M1/1‑37 (MQ=255) gTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcgtgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaa < 1:469437‑M1/143‑107 (MQ=255) tttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcagcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaa < 1:98892‑M1/143‑110 (MQ=255) tttGTAATTGGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaa < 1:602961‑M1/143‑110 (MQ=255) tgaaatttTTTCAGGTTGGATTGTTCTTTCTTaacaatttcttgattgtgcgacatttaaaagcgcctcacctcgatacaaggcatcagaagagtatgcgtcatgccggagcgcccagcataagaaatctgatataaaaaact < 2:517569‑M1/140‑112 (MQ=255) gTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactccattcgttatatggcatcaaaagaatatgcgtcatgccggaacgaccagcataagaaatctgatataaaaaactg > 1:303220‑M1/1‑31 (MQ=255) tAATGTGTTCAGGTTGTATGGTTCTTTCTTactaatttcgtgattttgcgacatttaaaagcgactcaagtcgttatatggcagcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgt < 2:55243‑M1/143‑114 (MQ=255) aaTTTGTTCAGGTTGTATTGTTCTTTCTTaataatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtg < 2:812595‑M1/143‑115 (MQ=255) aTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtgg < 2:826097‑M1/143‑116 (MQ=255) tGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgt < 1:746804‑M1/143‑119 (MQ=255) aGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatg < 1:792323‑M1/143‑124 (MQ=255) gTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgcaggaccgcccagcgtaagaaatctgataaaaaaacctgtggcgggtatggt > 2:720803‑M1/1‑18 (MQ=255) aTTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgcctcaattcgttatatggcatcagaagagtctgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtagggtacgga > 2:456573‑M1/1‑13 (MQ=255) aTTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtcgcgtgcatggtacgga > 2:362500‑M1/1‑13 (MQ=255) ctgTTCTTACTTactaatttgtggatgcggcgacattgaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggat < 1:25507‑M1/142‑132 (MQ=255) tctttcgtactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagaggaggcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattaga < 1:169038‑M1/143‑136 (MQ=255) ctttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagag < 1:85915‑M1/143‑137 (MQ=255) tttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagagg > 2:562570‑M1/1‑6 (MQ=255) tttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggcacggcgtagagg > 1:705047‑M1/1‑6 (MQ=255) tttcttactaattgcgtgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagagg < 2:29880‑M1/143‑138 (MQ=255) ttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggagcgcccagcataagaaatctgatataaaaaactgtgacgtgtagggtacggattcaaggg > 2:569456‑M1/1‑5 (MQ=255) | GCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACC > NC_000913/1411783‑1412062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |