| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,411,925 | Δ23,060 bp | [ttcA]–[ttcC] | 33 genes [ttcA], intR, ydaQ, ydaC, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, [ttcC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1411925 | 1434984 | 23060 | 60 [0] | [1] 61 | [ttcA]–[ttcC] | 33 genes [ttcA], intR, ydaQ, ydaC, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, [ttcC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1411924 | 0 (0.000) | 48 (1.190) | 43/232 | 0.0 | 100% | coding (25/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | 1434985 = | 0 (0.000) | pseudogene (24/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication,Phage or Prophage Related | |||||
AAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGG > NC_000913/1434843‑1435122 | gcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttctta < 1:370364‑M2/1‑1 (MQ=255) catcgtctagctgtctcgtcccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttAc < 2:686583‑M2/2‑1 (MQ=255) atggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttcttttttACt > 1:449256‑M2/141‑143 (MQ=255) gtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAAt < 2:762658‑M2/6‑1 (MQ=255) tatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttggtcaggttgtattgttctttcttACTAAtt > 1:342673‑M2/137‑143 (MQ=255) tagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTc < 1:297576‑M2/9‑1 (MQ=255) ttacccccggagaggcaaaccctgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgtcgcagtcgtttttgtattttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTg < 2:847337‑M2/18‑1 (MQ=255) gtactcccgtagaggcaaaccatgatgcggtcgccttcttcgatcgtagtgaagtcagctatggcttcgcccacgttacgacgcagtcgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTg < 2:789974‑M2/18‑1 (MQ=255) acccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgcagaagacttttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCg > 2:98892‑M2/124‑143 (MQ=255) ccggataggcaaaccatgatgctatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACAt < 1:48279‑M2/24‑1 (MQ=255) agaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTtac > 2:170297‑M2/116‑142 (MQ=255) gcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaagttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGc > 2:85915‑M2/112‑143 (MQ=255) aaaccgtgatgcgatcgccttcttcaagcatattgaagtcagcaatggcttcggccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa < 2:398675‑M2/34‑1 (MQ=255) aaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa > 1:826097‑M2/110‑143 (MQ=255) aaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa < 2:756981‑M2/34‑1 (MQ=255) gatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttggattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAtt < 1:613602‑M2/41‑1 (MQ=255) atgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgaagttgttaattgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTc > 2:836165‑M2/102‑143 (MQ=255) atgcgatcgccttcttcaatcatattcaagtcagcaatggcttcgcccacgttacgtcgcagacgtttttgtaatttgttctggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTc < 2:373083‑M2/42‑1 (MQ=255) tgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCg > 1:649083‑M2/101‑143 (MQ=255) gatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTta < 2:174185‑M2/46‑1 (MQ=255) cgccttcttcaatcctattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTatat < 1:787541‑M2/49‑1 (MQ=255) ctttttcaatcatatgaaaatcaccaatagctgcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGc < 1:788049‑M2/52‑1 (MQ=255) cttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtatcgttctttcttACTAATTTCTAGACTTAACAACTTTTAATGGCGACTCAATTCGTTATATGGc > 1:432293‑M2/92‑143 (MQ=255) tcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTACTATCTTGATCTTTCGACATTTAAAAGCGACTCAATTCGTTATCTTGCAt > 2:376012‑M2/90‑143 (MQ=255) ttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCa > 1:634535‑M2/88‑143 (MQ=255) ttcaaccatatggaagtcagcaagggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCa < 1:28134‑M2/56‑1 (MQ=255) aatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCagaa < 2:155823‑M2/59‑1 (MQ=255) ttgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATg > 1:858233‑M2/78‑143 (MQ=255) ttgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGGATg > 2:612856‑M2/78‑143 (MQ=255) agctatggtttttcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGc < 1:530066‑M2/74‑1 (MQ=255) agcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGAATCAATTCGTTAtattgcgtcagaagagagtgcacaatgc > 2:701786‑M2/70‑131 (MQ=255) gcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGcc > 2:390485‑M2/69‑143 (MQ=255) ttcgcccacgttacgacgcagacgtttttgtaatttgttcaggtggtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCCGACGTTTGTTCGTCATGCCGGAACGcc > 2:555034‑M2/61‑143 (MQ=255) gcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAg > 1:514378‑M2/58‑143 (MQ=255) cccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGc > 1:646006‑M2/57‑143 (MQ=255) cacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGTCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt > 2:251220‑M2/55‑143 (MQ=255) cggtacggggcagacgcttttggaatgtgttcaggttgcattgttctttcgtACTAATCTCTTGATCTTGCGACATTTTAAAGCGACTCAATCCGTTATATGGCATCATAAGAGTATGCGTCATGCCGGAACGCCCAGCATaa < 1:192223‑M2/91‑1 (MQ=255) acgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGaaa > 1:806182‑M2/49‑143 (MQ=255) gccgcagacggttttgtaatttgttctggtgttattgttctttcttACTAATTTCTTGTTTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATc < 2:817125‑M2/97‑1 (MQ=255) gtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGATCGCCGAGCCTAAGAAATCTGGTAtaac > 2:491485‑M2/38‑142 (MQ=255) gtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCGTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaa < 1:469437‑M2/106‑1 (MQ=255) tttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCAGCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaaa < 1:98892‑M2/109‑1 (MQ=255) tttgtaattggttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaaa < 1:602961‑M2/109‑1 (MQ=255) tgaaattttttcaggttggattgttctttcttAACAATTTCTTGATTGTGCGACATTTAAAAGCGCCTCACCTCGATACAAGGCATCAGAAGAGTATGCGTCATGCCGGAGCGCCCAGCATAAGAAATCTGATATAAAAAACt < 2:517569‑M2/111‑1 (MQ=255) gtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTCGTTATATGGCATCAAAAGAATATGCGTCATGCCGGAACGACCAGCATAAGAAATCTGATATAAAAAACtg > 1:303220‑M2/32‑143 (MQ=255) taatgtgttcaggttgtatggttctttcttACTAATTTCGTGATTTTGCGACATTTAAAAGCGACTCAAGTCGTTATATGGCAGCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtgt < 2:55243‑M2/113‑1 (MQ=255) aatttgttcaggttgtattgttctttcttAATAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtgtg < 2:812595‑M2/114‑1 (MQ=255) aatttGTTCAGTTCGTAGTGGTCCTGCTTACTACTTTCTTGATTTTGCGACATTTATAAGTGACTTCCTTCTTTATAGGGCATCAGAAGCGTGTGCCTCATGCCGTATCGCCCAGTATAAGATATCTGATATAAAAAACtgtg < 2:417978/140‑1 (MQ=255) atttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTgg < 2:826097‑M2/115‑1 (MQ=255) tgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCgt < 1:746804‑M2/118‑1 (MQ=255) aggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATg < 1:792323‑M2/123‑1 (MQ=255) gttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCAGGACCGCCCAGCGTAAGAAATCTGATAAAAAAACCTGTGGCGGGTATGGt > 2:720803‑M2/19‑143 (MQ=255) attgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGCCTCAATTCGTTATATGGCATCAGAAGAGTCTGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTAGGGTACGGa > 2:456573‑M2/14‑143 (MQ=255) attgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTCGCGTGCATGGTACGGa > 2:362500‑M2/14‑143 (MQ=255) ctgttcttacttACTAATTTGTGGATGCGGCGACATTGAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAt < 1:25507‑M2/131‑1 (MQ=255) tctttcgtACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGGAGGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTaga < 1:169038‑M2/135‑1 (MQ=255) ctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTagag < 1:85915‑M2/136‑1 (MQ=255) tttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgg > 2:562570‑M2/7‑143 (MQ=255) tttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGCACGGCGTAGAgg > 1:705047‑M2/7‑143 (MQ=255) tttcttACTAATTGCGTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgg < 2:29880‑M2/137‑1 (MQ=255) ttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAGCGCCCAGCATAAGAAATCTGATATAAAAAACTGTGACGTGTAGGGTACGGATTCAAggg > 2:569456‑M2/6‑143 (MQ=255) | AAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGG > NC_000913/1434843‑1435122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |