| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 55 (1.110) | 47/284 | 0.0 | 100% | intergenic (+776/‑1) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1309405 = | 0 (0.000) | coding (865/1254 nt) | kch | voltage‑gated potassium channel | |||||
TATCTTTTGCCGAGAGTACAACAAACGCGTTATCTGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTAC > NC_000913/1309267‑1309545 | tgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggaccgctgatagaaccagaagccactggagcacctcaaaaacaccatcatacactcaatccgtacgctggcagcatccccCGCCt > 2:300484‑M2/139‑143 (MQ=255) atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTaa < 1:745113‑M2/7‑1 (MQ=255) cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGtt > 1:140720‑M2/132‑143 (MQ=255) ggcggtggttttgccgttagggagcagcccgtcagtagctgaacaggagggacagctgatagaaactgaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTg < 2:422258‑M2/13‑1 (MQ=255) ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTg < 1:138082‑M2/13‑1 (MQ=255) tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcggtacggtggcagcatcaccCGCCTAGGCGGTGCTcac > 1:819721‑M2/126‑142 (MQ=255) ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGtt > 1:139843‑M2/123‑143 (MQ=255) gccgctaagcactagcccgtcagtagctgaacaggagagacatctgatagaaacagaagccactggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCtt < 2:13074‑M2/25‑1 (MQ=255) cgttacgcaccaccccgtcagtagctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGa > 1:818349‑M2/117‑143 (MQ=255) ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGata < 2:501034‑M2/29‑1 (MQ=255) ctacgcaccgccccgtgaggagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccgtcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGata < 1:87520‑M2/29‑1 (MQ=255) accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCCTCCTCa > 2:777834‑M2/106‑143 (MQ=255) cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcataaccCGCCTAAGCGTTGCTCAAGTTGCCTGATATCCTCTTCCGgcc > 1:95118‑M2/102‑142 (MQ=255) tcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAg < 1:282960‑M2/44‑1 (MQ=255) gagtagctgcacaggagcgacagctgatagaaacagaagccactggagcacctcaaaaacaccctcatacactaactcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGt < 2:769993‑M2/45‑1 (MQ=255) agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAgtg > 1:792557‑M2/98‑142 (MQ=255) gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAGGTTg > 1:488374‑M2/97‑143 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAATTGCTTGATATCACCTTCAGGCACGTTGCTCAt > 2:811336‑M2/92‑143 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGtt > 2:426191‑M2/85‑143 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGtt > 1:548480‑M2/80‑143 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGtttt > 2:479524‑M2/78‑143 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGtttt < 1:438793‑M2/66‑1 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGt > 2:315935‑M2/76‑143 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTCCGTCTTGTc > 2:551441‑M2/75‑143 (MQ=255) cactaacctagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTcc < 2:766071‑M2/70‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCACGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGGTACGTtttgtcctcctt > 1:734781‑M2/69‑138 (MQ=255) agcagccactggtgcacctcaaaaacaccatcatacactcacgcgctcggttggcggcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGAtt < 2:455457‑M2/79‑1 (MQ=255) actgtggcacctcaaaaacaccatcatacactaattcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGc < 2:436689‑M2/86‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactgaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCCAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGc > 2:818913‑M2/58‑143 (MQ=255) ggccgggatagacatcatcatacacgagatcagtaaggtggcagcatcaccCGCCTAAGCGTTGCTGAAGTTGCTTGGTATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATc < 2:745106‑M2/92‑1 (MQ=255) gcacctctaatacaccatcatggagtgggtcagcaagtgggcagcatcgccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATc < 1:28053‑M2/92‑1 (MQ=255) gcacctcaaaaagaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATc < 1:436596‑M2/92‑1 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGtccgacttgattcagctcacggagcgtct > 1:169314‑M2/48‑129 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCAGCGTTGATTCAGTTGCAGGATCGTCtt > 2:278279‑M2/47‑143 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTg > 1:696009‑M2/46‑143 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATCTTAGCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGAt < 2:563377‑M2/100‑1 (MQ=255) gaacaccagcatacactaactcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATg < 2:593720‑M2/101‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGaa < 1:765787‑M2/108‑1 (MQ=255) acactaagtcagtaagttggcagcatcaccCGGCTAACCGTTGCGCAATGTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGaa < 2:295262‑M2/113‑1 (MQ=255) actaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGCATCGACTg > 2:736904‑M2/29‑143 (MQ=255) actaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGACTg > 2:854332‑M2/29‑143 (MQ=255) ctaaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTGGATATCATCTTCAGGCAAGTTGCTGATAACTGTTACGTTTTGTCCGCGGTGGTTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGt > 1:535318‑M2/28‑143 (MQ=255) taaatcagtaagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGGATCGAATGTc > 2:697735‑M2/27‑143 (MQ=255) attcagtgcgcaccatcaccCGCCTAAGCGTTGCTCAACTTGCTTGACATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGCTTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCaaa < 1:56199‑M2/123‑1 (MQ=255) ttgactcgtcagcatcaccCGCCTAAGCGTTGCTCAATTTGCGTTATATCATCTTCAGTCAAGTTTCTCATAACCGGTACGTTTTGTCCGCGTTGATTCAGTTGCAGTATCGTATTGATGGCGAGAATCGAATGTCCGCAAAc < 2:95084‑M2/124‑1 (MQ=255) taagttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGCTGGCGCGAATCGACTCTCCGCAACCa > 2:816054‑M2/19‑143 (MQ=255) agttggcagcaacaccCGCCGAAGCGGTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAAt < 1:25836‑M2/127‑1 (MQ=255) ttggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATaa < 1:479524‑M2/129‑1 (MQ=255) ggcagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATaaaa < 1:76041‑M2/131‑1 (MQ=255) gcatcatccccCGCCTAAGCGTTGCTCAAGTTGCTTGACATCATCTTCAGGCAAGTTGCTGATAACCGTCACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAAt < 1:63538‑M2/132‑1 (MQ=255) cagcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGACTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCCCCAACAATAAAATg > 2:347899‑M2/11‑143 (MQ=255) agcatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTGTTGTCCGCGTTGCTTCGGTTGCCGGATCGTATTGATGGCGAGAATCGACTGTCCGCACACCATAAAATGa > 1:165515‑M2/10‑143 (MQ=255) tatcaccCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATc < 2:350634‑M2/136‑1 (MQ=255) tcaccCGACTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTACGCGTTGATTGAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCtt < 1:300484‑M2/138‑1 (MQ=255) ccCGCCTAAGCGTTGCTAAAGTTGCGTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTAc > 2:106164‑M2/3‑143 (MQ=255) | TATCTTTTGCCGAGAGTACAACAAACGCGTTATCTGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTAC > NC_000913/1309267‑1309545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |