New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	0 (0.000)	54 (1.120)	43/278	0.1	100%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

TTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607878‑608148                                                                                                                                      |                                                                                                                                          ttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGCAGGAACGTAATATTGCGTTTAAGGCTCTTCTCGCTTACGAACCGAAGAAATAACAGTAGAGCGGGGAGTAATCCCATAAGAGCTa                                                                                                                                  >  1:329428/1‑143 (MQ=255)      gggggtGGGATTTACGGTTCTGGTCGGATACTCGC‑‑TGTGAGTTTACGGTGAAGGACCGTAATATTGAGTGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                                           <  2:566858/138‑1 (MQ=255)       gTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGGTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                            <  1:465195/143‑1 (MQ=255)         gCTGGGATGTGCGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAgg                                                                                                                          <  2:528340/143‑1 (MQ=255)          cTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGGTAACTTAAggg                                                                                                                         >  1:615450/1‑143 (MQ=255)           tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTGTGGTTTAGGAACCGAAAAACTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                                        >  1:851459/1‑143 (MQ=255)           tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                                        >  1:743845/1‑143 (MQ=255)                  tACGCTTCTGGTCGGAGACTCGCTGTGTGAGATTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGGGTGATCCCTTTCGCGCTGATTGAAGGGTTGTGGTa                                                                                                                 >  1:170885/1‑143 (MQ=255)                   aggctgctGGTCGGAGACTCGCCGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGCAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                <  1:133035/141‑1 (MQ=255)                        tCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                           >  1:150798/1‑143 (MQ=255)                        gcTGGCCGGAGACTCGCTGTGGGAGTGTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                           <  1:143829/142‑1 (MQ=255)                          tGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGCGTGGTCCCATAAGAGCTAACGTAAGGGTTGTGGTATTACGcca                                                                                                         >  1:763253/1‑142 (MQ=255)                           gatCGGAGCCTCGGTGGGTGAGTTTCCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                                                                                                        <  2:681299/141‑1 (MQ=255)                             tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTCat                                                                                                      >  1:841834/1‑143 (MQ=255)                                  ggcTCGCTGTGCGAGTGTACGGTGAAGGAACGGAATATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTGGGCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                 <  1:672003/141‑1 (MQ=37)                                     tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTATGCCTGATATGATTTa                                                                                              >  1:761545/1‑143 (MQ=255)                                      cGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                                                                                             <  1:88716/143‑1 (MQ=255)                                       ggtgtgcgggattACGGTGAAGGAACGTAATATTGAGTGTAAGGCTGTTCTCGCTTACGAACCGAAGATGTAGCCGCTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATACGATTTAAc                                                                                            <  1:547666/132‑1 (MQ=37)                                           tgtgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAACCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGCTGTGGTATTACGCCAGATATGATTTAACGTGc                                                                                        >  2:73729/1‑143 (MQ=255)                                               aGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGAAAAATAATGTGTTGTGGTATTACGCCTGATAGGATTTAACGGGGCGAt                                                                                    >  2:604418/1‑143 (MQ=38)                                                 tttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAGGGGTTGTGGTATTAAGACTGATATGATTTAAGGTGCCGGTGa                                                                                  >  1:70587/1‑143 (MQ=38)                                                  aaagtctGAATGCACGTAATATTGAGTTTAAGGCTGTTCGCGCTTACGAACCGAAAAAGTAGCCGTTGTGAGGGAAGTAATCCCATAAGCGCTAACTTAAGGGTTGTAGTATTACGCCTGATATGATTTAACGTGCCTATGaa                                                                                 <  2:371563/137‑1 (MQ=25)                                                    aCGGTGAAGGAACGGAAAATCGGGGGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                               <  1:531136/143‑1 (MQ=25)                                                       gTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGAGAATAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACACAAGATATAAGTTAACCTGCCGATGAATGAca                                                                            >  1:153204/1‑142 (MQ=37)                                                        tGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc                                                                           <  1:419151/143‑1 (MQ=255)                                                         gAAGGAACGTAATATTGAGTTTAAGGCTGTTCCCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct                                                                          <  1:261221/143‑1 (MQ=255)                                                            cgAACGTAATATTGAGTTTAAGGCTGTTCTCGCTGACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATGAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       <  2:396195/142‑1 (MQ=255)                                                              aaCGTGATATTGAGTCTAGGGCTGGGCTCGCTTACGTGCGGATGAAGCAGCCGTTGTGCGGGGAGTAATCACATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGa                                                                     <  2:604660/143‑1 (MQ=18)                                                                  tAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                 >  1:22395/1‑143 (MQ=255)                                                                     tatTGAGATTAAGGCGGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCGATAAGAGATAACATGAGGGTAGGGGTATGACGCCTGAAGTGATTTAACGTGGCGAAGAATGAGTCGAACGATAACTgg                                                              >  2:31315/1‑143 (MQ=255)                                                                          aGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGc                                                         >  1:46955/1‑143 (MQ=255)                                                                           gTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa                                                        >  1:596434/1‑143 (MQ=255)                                                                            tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                       >  2:558537/1‑143 (MQ=255)                                                                              tAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGACGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAtt                                                     <  1:809818/143‑1 (MQ=255)                                                                                aGGCTGTTCTCGCTTACGCACCGAAGAAGTGGCCGTCGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGTATTACTCTCACGATAACTGGTCAGCAATTCt                                                   <  1:147336/143‑1 (MQ=255)                                                                                  gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       >  2:636313/1‑89 (MQ=255)                                                                                  gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       <  1:636313/89‑1 (MQ=255)                                                                                  gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 >  1:463097/1‑143 (MQ=255)                                                                                  gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGCTGTGCGGGGAGCAATCCCACACGCGCTCACCGGAGGGCTGTGGCATTACGCCCGATCTGATCTAACGCGCCGACGCATTACCCCCACGATACCTGGCCAGCactccggc                                                 >  2:103844/1‑136 (MQ=255)                                                                                     gTTCTCGCTTACGAACCGATGGAGTAGCTGTTGTGCGGGGAGTAATTCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAACTACTCTCACGATAACTGGTCAGCAATTCTGGccc                                              <  2:187972/143‑1 (MQ=18)                                                                                                 gAACCGAAGAAGTAGCCGTTGTGAGGGGAGTAATCCCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGc                                  <  2:615450/143‑1 (MQ=255)                                                                                                      gaagaaGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGATGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAGATTGGTAAGCCCgaa                             >  1:82201/1‑143 (MQ=255)                                                                                                             tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTGAGCATGTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  2:418165/143‑1 (MQ=255)                                                                                                             tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGCATTACGCCTGATATGACTTAACGTGCCGATGAATTACTCCCACGATAACTGGTCAGCAATTCTGGCCCATACCCGTAAGCCCCAAGCACCgg                      >  2:363312/1‑143 (MQ=14)                                                                                                                 cGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                  >  1:682054/1‑143 (MQ=255)                                                                                                                      tgCGAGGAGAAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCgg             <  1:109811/143‑1 (MQ=18)                                                                                                                             aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa      >  1:735206/1‑143 (MQ=33)                                                                                                                             aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGCAAGCCCGAAGATCTGGATACTTCGGCACGTaa      <  2:446254/143‑1 (MQ=18)                                                                                                                                 aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGcc  <  1:12000/143‑1 (MQ=11)                                                                                                                                      |                                                                                                                                          TTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607878‑608148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.