New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078055 (0.100)33 (0.750) 30/252 0.4 84.2% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 8 (0.180)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACA  >  NC_000913/1209462‑1209737
                                                                                                                                            |                                                                                                                                        
tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGGGCCTGAAGGCCACGGAACCGTGACACCAACAGGCAATCCAGCGcc                                                                                                                                        <  2:228316‑M2/143‑3 (MQ=255)
     cgctttagggggcggatacgcctttGCCAGGCCCTGGTATGCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACTCCAACTGGTAATGCAGAGccttctc                                                                                                                                   >  1:817748‑M2/13‑136 (MQ=255)
      aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGGGccttcgcc                                                                                                                                  <  2:753606‑M2/143‑9 (MQ=255)
          tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTCCACCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGTAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                              >  2:269877‑M2/1‑131 (MQ=255)
          tatttGTCGGATAAGCCTTGGCCAGGTCCGGGTATTCCTCAGCAGAAAAAGCGGCACCATTGCATTTCGGCCAGCCTGTTGGCGGGGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                              >  2:152543‑M2/1‑131 (MQ=255)
              tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa                                                                                                                          >  1:786350‑M2/1‑127 (MQ=255)
               gccGGATAAGCCTTTGCCAGTGCCGGGCACTCAATATGAGATGAGTCGGCACCATGGCATTTCGGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaag                                                                                                                         <  2:374871/141‑2 (MQ=255)
                  cgATAAGCCGCGGCCAGTTCCGTGTCTGCTCCACCAGCAGCAGCGGCACCATGGCATTGCAGCCCGTCTGTTCGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGtt                                                                                                                      <  2:641645/142‑1 (MQ=255)
                      aaTCCTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAATCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcg                                                                                                                  >  1:739069‑M2/1‑119 (MQ=255)
                       aGCCTGTGCCAGTTCCGGGTATTCTTCAGCAGAAAAGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga                                                                                                                 >  2:198186‑M2/1‑118 (MQ=255)
                        gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGTACCATTGAGTGTGAGCCAGCCTGTTCGCGGCGTGGCTGAAGGAGACGGCAACGCGACACCAACAGGTGAGGCAGAGCGTTGTTCCAAcccgagcgtttccag                                                                                                                >  2:787410/1‑131 (MQ=255)
                         cttttgcTAGTTCTTGGTGTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                               >  2:481927‑M2/3‑116 (MQ=255)
                         ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                               >  1:183203/1‑143 (MQ=255)
                            ttGCCAGTTCCGGGTATTCTTCAGCAGAAACAGCGGAACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGccttctcccaaaccaaggttttcgagggcc                                                                                                            <  1:554907‑M2/143‑31 (MQ=255)
                               ccAGTGCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt                                                                                                         >  1:75449‑M2/1‑110 (MQ=255)
                                cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                        <  1:727311‑M2/143‑35 (MQ=255)
                                     ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca                                                                                                   >  1:134758‑M2/1‑104 (MQ=255)
                                      cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGGACACCAACAGGTAATGCAGAGccttctgccaaaccaacatattcgagagccgattgcacag                                                                                                  <  2:229343‑M2/143‑41 (MQ=255)
                                       gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACACACGTTTATAAAACTGAAGAAATcaca                                                                                                >  2:697084/1‑143 (MQ=255)
                                               ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg                                                                                         <  1:16075‑M2/143‑50 (MQ=255)
                                                 cggcagcaaaAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGTCTGAAGGCCACGGAACCGGGACACCAACAGGCAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgat                                                                                       >  2:77795‑M2/3‑92 (MQ=255)
                                                    cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTTGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTTCTCCCACACCAACGTTTATGAACATGAAGAAATAACAAACAAATGGcctc                                                                                   >  2:417454/1‑143 (MQ=255)
                                                    cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTGTGAAAATAAGGATAGAACAAGCAAAGGGcatc                                                                                   >  2:405925/1‑143 (MQ=255)
                                                         aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTAGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc                                                                               <  1:505490‑M2/143‑60 (MQ=255)
                                                                   tgttgtcttccacccggCCTGTTGGCGGAGTGGCTGAGGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga                                                                     >  2:500733‑M2/8‑74 (MQ=255)
                                                                     ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt                                                                   <  1:450247‑M2/143‑72 (MQ=255)
                                                                      tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaccggattc                                                                  <  1:260354‑M2/143‑73 (MQ=255)
                                                                          tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccctccgctttgctatctcccgacggctttttgc                                                              <  1:161776‑M2/143‑77 (MQ=255)
                                                                          tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAGGGGGa                                                             >  1:552278/1‑143 (MQ=255)
                                                                           ttCAGCCAGCCTGTTGGCGGAGTGGGTGATGGTGACCGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgcagtcttgcg                                                             <  2:613018‑M2/143‑78 (MQ=255)
                                                                           ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagaaccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg                                                             <  2:624635‑M2/143‑78 (MQ=255)
                                                                                 cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa                                                       >  2:235491‑M2/1‑60 (MQ=255)
                                                                                      tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctgctcccaaaccaaggttttcgagagccgtttgcacactcccatccgatttgatatcgcccaacagaatcctgcgacttcacagca                                                  <  2:109931‑M2/143‑89 (MQ=255)
                                                                                          ggCGGAGTGGCTGAAGGCCACGGAACCGTGACCCCAACTTGTAATGCAGAGCCTGCTCCCAAACCAACGTTTATACAAATAAAGAAATAATAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                             <  1:396060/143‑1 (MQ=255)
                                                                                          ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagccgcgc                                              <  2:114353‑M2/143‑93 (MQ=255)
                                                                                                   gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattaattatcgtcatacggcatcttccattgttacagcagcgcgcgcagtgc                                     <  1:116649‑M2/143‑102 (MQ=255)
                                                                                                    cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                    >  1:711847‑M2/1‑41 (MQ=255)
                                                                                                     tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcctaacagcagcgcgcgcagtacgg                                   <  2:52405‑M2/143‑104 (MQ=255)
                                                                                                        aGGCCACGGAACCGGGACGCCATCAGGTAATGCAGAGccttctcccgaacctaggttttcgagagccgtttgcacagtgccatccgacttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                >  2:17083‑M2/1‑37 (MQ=255)
                                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa                            <  1:830564‑M2/143‑111 (MQ=255)
                                                                                                             aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccataccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgtaacagcagcgcgcggagtgcggtaaggaac                           <  1:374324‑M2/143‑112 (MQ=255)
                                                                                                                    cGGGACACCAACCGGTAATGCAGAGccttctcccaaaccatggttttcgagagccgtttgcacagtgccagccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                    >  1:205726‑M2/1‑25 (MQ=255)
                                                                                                                    cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatcgccaaacggattcttgcggcttcacagcagcgcgcgaagtgcggtcagtaactgtggtg                    <  2:259594‑M2/143‑119 (MQ=255)
                                                                                                                     gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtg                   <  1:185119‑M2/143‑120 (MQ=255)
                                                                                                                     gggACACCAACAGGTAATGCAGAGcctactcccaaaccaaggttttcgagagccgtttgcacagtgccatccgaattgatatcgcaaaacggattcttgcggcttaacagcagcgagcgaagtgcggagagaaactggacgag                   <  2:712543‑M2/143‑120 (MQ=255)
                                                                                                                         cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc               >  2:695230‑M2/1‑20 (MQ=255)
                                                                                                                                  gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggcaagtaactggtcgtgccgccccttctcc      <  2:856487‑M2/143‑133 (MQ=255)
                                                                                                                                     aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg   <  1:509126‑M2/143‑136 (MQ=255)
                                                                                                                                     aTGCAGAGCCTTCTCCCAAACCAACGGGAATATAATAATTTAAATAACAAGCAAATGGCATCATTCATGGTTTTAGCTAAAAATGATGACATGCTTATTGGCTATTTTCGCGTTTCGACAAAGGACCATAACACAGATCTACa  >  2:651497/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                        
TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACA  >  NC_000913/1209462‑1209737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.