| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,213,568 | Δ48 bp | coding (524‑571/1842 nt) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3213568 | 3213615 | 48 | 51 [0] | [1] 52 | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3213567 | 0 (0.000) | 47 (0.730) | 41/264 | 0.5 | 100% | coding (523/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | NC_000913 | 3213616 = | 0 (0.000) | coding (572/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
AACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTG > NC_000913/3213426‑3213708 | aaCCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCCGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAAGGCAGAAGAAGAGCTGGa > 2:556915‑M1/1‑142 (MQ=255)aaCCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGa > 1:896674‑M1/1‑142 (MQ=255) aCCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGac > 2:459399‑M1/1‑141 (MQ=255) aGGTTCAGTGCGCCGTTGATGGATGACCGGAAGCGATCACCTAGCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgat < 1:493687‑M1/143‑6 (MQ=255) ggTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACTCGAACGCAGAAGGAGTTCTGGtcgatg > 1:640548‑M1/1‑137 (MQ=255) gTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGCAGCGCGTCGGTCCGATCTGATCACCGGCTTGGTCGACCCGAACGCAGCAGAAGAACGGGaccatga > 2:995723‑M1/1‑136 (MQ=255) gTTCAATGCTCCGGTGCTGAATATCCGGAAGCGAGCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatga < 1:1087137‑M1/143‑8 (MQ=255) tGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaaga > 2:314446‑M1/1‑130 (MQ=255) cTCCGTTGCTGAATATCCGGACGCGATTACCTATCTGCCGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatg < 1:320789‑M1/143‑16 (MQ=255) cGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCGGCACCATCTTATCTCCGTTTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaag < 1:555112‑M1/143‑19 (MQ=255) gctgcTGAATATCCGGGAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaaga < 2:58575‑M1/141‑20 (MQ=255) cTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGACGAAGATCTGGacgatgacgaagatgaagacgaa > 2:715382‑M1/1‑120 (MQ=255) aaTATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaa > 1:801894‑M1/1‑117 (MQ=255) atatCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGCCTGTCCGATCTGATCACCGGCTACGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaaaatgaaaacgaagaag > 2:911483‑M1/1‑116 (MQ=255) tatCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCATTGTTGGCCCGAACGCCGAAGAAGATCTCGacgatcacgaagaagaagaccacgaaga > 2:815376‑M1/1‑115 (MQ=255) ccGGAAGCGATCACCTATCTGCGGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGAGCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatgg < 2:942787‑M1/143‑32 (MQ=255) ggAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcg > 2:102486‑M1/1‑110 (MQ=255) cGATCACCTATCTGCTGGAACAGGACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgac < 1:631142‑M1/143‑39 (MQ=255) cTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcg > 1:849265‑M1/1‑98 (MQ=255) tCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaaggtggcgaggacgacagcgccg > 2:5786‑M1/1‑95 (MQ=255) tCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGaacgtgtcttagatgaagacgaagaagatggcgatgacgacagcgccg > 1:868433‑M1/1‑95 (MQ=255) gtgctggAGCAGTACGATCGTGTTGATGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgtcgaagatgaagacgaagaagatggcgatgacgacagcgccga < 2:988201‑M1/142‑50 (MQ=255) tgGACCCGTAGGGTCGTGTTGCAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgat < 2:318385‑M1/143‑54 (MQ=255) tgGAACAGTACGATCGGGTTGAAGCAGAAGAAGGGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgat < 2:102107‑M1/143‑54 (MQ=255) ggAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatg > 1:1111607‑M1/1‑89 (MQ=255) ggAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACAGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgctg > 1:626054‑M1/1‑89 (MQ=255) gAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatga < 1:941685‑M1/143‑56 (MQ=255) gAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTGGACCCGAACGCAGAGGAAGATCTGGacgctgacgagcatggagacgaagacaatggcgaggacgacagcgcggatagtga > 2:92092‑M1/1‑88 (MQ=255) cGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgcagaagatggcgctggcgacagcgccgatgatgacaacagca > 1:1151408‑M1/1‑80 (MQ=255) cGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACAGGCTTTGTTGACCCGAACGCAGAAGACGACCTGGacgaagacgacgatgacgacgaaccagatggcgacgacgaccgcgccgacgacgacaacagca > 2:455329‑M1/1‑80 (MQ=255) gATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcat < 1:1174327‑M1/143‑65 (MQ=255) tCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcg > 2:191596‑M1/1‑77 (MQ=255) cgggttgaAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcga < 1:370692‑M1/140‑68 (MQ=255) gtTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgaccc > 1:158037‑M1/1‑73 (MQ=255) agaagCGCGTCTGTCCGATGTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctc < 2:874619‑M1/143‑82 (MQ=255) gcgTGTGTCCGATCGGATCACGGGCTTTGGGGACCCGAACGCGGAAGAAGATCTGGacgatgacgaagatgaagacgaagaggatggcgatgacgacagcgccgatgatgacaacagcatcgtcccggaactggctcgcgaaa < 2:148633‑M1/143‑88 (MQ=255) gTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgaccgcgccgatgatgccaacagcctcgacccggaacgggctcgcgaacaa > 2:238540‑M1/1‑54 (MQ=255) ccGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcg < 1:459399‑M1/143‑96 (MQ=255) cTGATCACGGGCTTTGTGGATCCGAACGCAGAAGAAGAGCTGGaggatgacgaagatgaagacgaagaagagggcaatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaact < 1:500614‑M1/143‑101 (MQ=255) tGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaacta > 2:171353‑M1/1‑42 (MQ=255) aTCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaaggagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaagtggctcgcgaaaaatttgcggaactacg > 2:672976‑M1/1‑40 (MQ=255) gggcTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctc < 1:1033498‑M1/142‑109 (MQ=255) ggCTTTGTTGACCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgagccggaactggctcgcgaacaatttgcggaactacgcgctcc > 1:408869‑M1/1‑34 (MQ=255) aCCCGAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgta > 2:497803‑M1/1‑24 (MQ=255) taacGCAGAAGAATATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgc < 1:1070243‑M1/142‑124 (MQ=255) gAACGCAGAAGAAGATCTGGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggcccgcgaaaactttgcggaactacgcgctcagcacggtgtaacgc > 2:52352‑M1/1‑20 (MQ=255) aCGCAGAAGAAGACCTGGacgaggacgaagacgaagacgaagaggatggcaatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgcgt < 2:510549‑M1/143‑126 (MQ=255) agtatctTGgcgatgacgaagatgaagacgaagaagagggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgcgtgacaccatc < 2:338101‑M1/140‑135 (MQ=255) acctgGacgatgacgaagatgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgcgtgacaccatcaaa < 1:123797‑M1/141‑138 (MQ=255) aTCTGGacgatgacgaagacgaagacgaagaagatggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgcgtgacaccatcaaa < 1:53114‑M1/143‑138 (MQ=255) ggacgatgacgaagatgaagccgaaaaagatggcgttgacgacagcggcgatgatgacaacagcatcgacccggaactggctcgcgaaaaatttgcggaactacgcgctcagtacgttgtaacgcgtgacaccatcaaagcga < 2:1010059‑M1/143‑142 (MQ=255) | AACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTG > NC_000913/3213426‑3213708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |