| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,213,568 | Δ48 bp | coding (524‑571/1842 nt) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3213568 | 3213615 | 48 | 51 [0] | [1] 52 | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3213567 | 0 (0.000) | 47 (0.730) | 41/264 | 0.5 | 100% | coding (523/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | NC_000913 | 3213616 = | 0 (0.000) | coding (572/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
CTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGA > NC_000913/3213474‑3213756 | aaccaggttcaatgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagccgaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaaggcagaagaagagctgga > 2:556915‑M2/143‑143 (MQ=255)aaccaggttcaatgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctgga > 1:896674‑M2/143‑143 (MQ=255) accaggttcaatgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggAc > 2:459399‑M2/142‑143 (MQ=255) aggttcagtgcgccgttgatggatgaccggaagcgatcacctagctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGAt < 1:493687‑M2/5‑1 (MQ=255) ggttcaatgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgactcgaacgcagaaggagttctggTCGATg > 1:640548‑M2/138‑143 (MQ=255) gttcaatgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagcagcgcgtcggtccgatctgatcaccggcttggtcgacccgaacgcagcagaagaacgggACCATGa > 2:995723‑M2/137‑143 (MQ=255) gttcaatgctccggtgctgaatatccggaagcgagcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGa < 1:1087137‑M2/7‑1 (MQ=255) tgctccgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGa > 2:314446‑M2/131‑143 (MQ=255) ctccgttgctgaatatccggacgcgattacctatctgccggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATg < 1:320789‑M2/15‑1 (MQ=255) cgttgctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtcggcaccatcttatctccgtttttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAg < 1:555112‑M2/18‑1 (MQ=255) gctgctgaatatccgggagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGa < 2:58575‑M2/19‑1 (MQ=255) ctgaatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagacgaagatctggACGATGACGAAGATGAAGACgaa > 2:715382‑M2/121‑143 (MQ=255) aatatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACgaagaa > 1:801894‑M2/118‑143 (MQ=255) atatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgcctgtccgatctgatcaccggctacgttgacccgaacgcagaagaagatctggACGATGACGAAAATGAAAACGaagaag > 2:911483‑M2/117‑143 (MQ=255) tatccggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggcattgttggcccgaacgccgaagaagatctcgACGATCACGAAGAAGAAGACCAcgaaga > 2:815376‑M2/116‑143 (MQ=255) ccggaagcgatcacctatctgcgggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgagctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATgg < 2:942787‑M2/31‑1 (MQ=255) ggaagcgatcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCg > 2:102486‑M2/111‑143 (MQ=255) cgatcacctatctgctggaacaggacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATgac < 1:631142‑M2/38‑1 (MQ=255) ctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAgcg > 1:849265‑M2/99‑143 (MQ=255) tctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGGTGGCGAGGACGACAGCGCCg > 2:5786‑M2/96‑143 (MQ=255) tctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggAACGTGTCTTAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCg > 1:868433‑M2/96‑143 (MQ=255) gtgctggagcagtacgatcgtgttgatgcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGTCGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCga < 2:988201‑M2/49‑1 (MQ=255) tggacccgtagggtcgtgttgcagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCgatgat < 2:318385‑M2/53‑1 (MQ=255) tggaacagtacgatcgggttgaagcagaagaagggcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCgatgat < 2:102107‑M2/53‑1 (MQ=255) ggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGatgatg > 1:1111607‑M2/90‑143 (MQ=255) ggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcacaggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGatgctg > 1:626054‑M2/90‑143 (MQ=255) gaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGAtgatga < 1:941685‑M2/55‑1 (MQ=255) gaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgtggacccgaacgcagaggaagatctggACGCTGACGAGCATGGAGACGAAGACAATGGCGAGGACGACAgcgcggatagtga > 2:92092‑M2/89‑138 (MQ=255) cgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGCAGAAGATGGCGCTGGCGACAGCGCCGATGATGACAACAGCa > 1:1151408‑M2/81‑143 (MQ=255) cgatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcacaggctttgttgacccgaacgcagaagacgacctggACGAAGACGACGATGACGACGAACCAGATGGCGACGACGACCGCGCCGACGACGACAACAGCa > 2:455329‑M2/81‑143 (MQ=255) gatcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCAt < 1:1174327‑M2/64‑1 (MQ=255) tcgtgttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCg > 2:191596‑M2/78‑143 (MQ=255) cgggttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGa < 1:370692‑M2/67‑1 (MQ=255) gttgaagcagaagaagcgcgtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGAccc > 1:158037‑M2/74‑143 (MQ=255) agaagcgcgtctgtccgatgtgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTc < 2:874619‑M2/81‑1 (MQ=255) gcgtgtgtccgatcggatcacgggctttggggacccgaacgcggaagaagatctggACGATGACGAAGATGAAGACGAAGAGGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGTCCCGGAACTGGCTCGCGaaa < 2:148633‑M2/87‑1 (MQ=255) gtctgtccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACCGCGCCGATGATGCCAACAGCCTCGACCCGGAACGGGCTCGCGaacaa > 2:238540‑M2/55‑143 (MQ=255) ccgatctgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCg < 1:459399‑M2/95‑1 (MQ=255) ctgatcacgggctttgtggatccgaacgcagaagaagagctggAGGATGACGAAGATGAAGACGAAGAAGAGGGCAATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACt < 1:500614‑M2/100‑1 (MQ=255) tgatcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTa > 2:171353‑M2/43‑143 (MQ=255) atcaccggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGGAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAAGTGGCTCGCGAAAAATTTGCGGAACTAcg > 2:672976‑M2/41‑143 (MQ=255) gggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTc < 1:1033498‑M2/108‑1 (MQ=255) ggctttgttgacccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGAGCCGGAACTGGCTCGCGAACAATTTGCGGAACTACGCGCtcc > 1:408869‑M2/35‑142 (MQ=255) acccgaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTa > 2:497803‑M2/25‑143 (MQ=255) taacgcagaagaatatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAAcgc < 1:1070243‑M2/123‑1 (MQ=255) gaacgcagaagaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCCCGCGAAAACTTTGCGGAACTACGCGCTCAGCACGGTGTAAcgc > 2:52352‑M2/21‑143 (MQ=255) acgcagaagaagacctggACGAGGACGAAGACGAAGACGAAGAGGATGGCAATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGt < 2:510549‑M2/125‑1 (MQ=255) agtatcttgGCGATGACGAAGATGAAGACGAAGAAGAGGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATc < 2:338101‑M2/134‑1 (MQ=255) atctggACGATGACGAAGACGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCaaa < 1:53114‑M2/137‑1 (MQ=255) acctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCaaa < 1:123797‑M2/137‑1 (MQ=255) tGGACGATGACGAAGATGAAGACGCAGACGCTGGCGATGACGACAGCGCAGATGATGACAACAGCGTCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAGCTAGCCCGTCAGTACCTTCGAACGGGTCGCACCagcccaccc > 2:361312/1‑135 (MQ=255) ggACGATGACGAAGATGAAGCCGAAAAAGATGGCGTTGACGACAGCGGCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGa < 2:1010059‑M2/141‑1 (MQ=255) | CTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGA > NC_000913/3213474‑3213756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |