New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1853718 =	56 (0.840)	4 (0.060)	4/276	9.6	7.5%	coding (262/1359 nt)	ydjE	putative MFS sugar transporter, membrane protein
	?	NC_000913	= 2173995	44 (0.680)					pseudogene (282/914 nt)	gatC	pseudogene, galactitol‑specific enzyme IIC component of PTS,transport, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system galactitol‑specific enzyme IIC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACA  >  NC_000913/1853582‑1853854                                                                                                                                         |                                                                                                                                         gCATAGCCAACCGTAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGcgccg                                                                                                                                    <  2:102132/143‑1 (MQ=255) gCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGGGAAAGGAGATGAGCCAGTACATGTCCGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGCTGAGCAGCTTTATGCTAAACGCCCTGcgccg                                                                                                                                    >  2:666401/1‑143 (MQ=255)  cATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATCTCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGcgccgc                                                                                                                                   >  1:837918/1‑143 (MQ=255)  cATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCAGcgccgc                                                                                                                                   >  1:698103/1‑143 (MQ=255)   aTAGCCAACCGTAAGCAGCGCCCCCCTTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCgccgcc                                                                                                                                  <  1:1105632/143‑1 (MQ=255)   aTAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGCTTTATGCGAACCGCCCTGCgccgcc                                                                                                                                  >  2:404161/1‑143 (MQ=255)      gCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCaa                                                                                                                               <  2:9407/143‑1 (MQ=255)         aaCCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTAATGCGAAACGCCCAGCGCCGCCAAAagt                                                                                                                            >  1:225747/1‑143 (MQ=255)              tAATCAGCGTCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCa                                                                                                                       <  2:930683/143‑1 (MQ=255)                 tCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCCGTTGCAGCAATCCCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAACTAGTCACCa                                                                                                                    >  2:190099/1‑143 (MQ=255)                    gcgcCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGACAGTACATATCGATGTCAAAAGCGGAAGCACTCACAACAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATa                                                                                                                 >  2:848655/1‑143 (MQ=255)                            aTTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACccacc                                                                                                         <  2:509621/143‑1 (MQ=255)                                     cccATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGa                                                                                                >  2:217759/1‑143 (MQ=255)                                       cATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGATAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAACGTAGTCACCACTAAACCCACCCGTACGTGAGc                                                                                              >  2:861668/1‑143 (MQ=255)                                        aTCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAACGTAGTCACCAATAAACCCACCAGTAAGTGAgac                                                                                             >  2:363296/1‑141 (MQ=255)                                            gggagtcaaaGCAGCTGACCCAGTACATATCAGGGGCAAACGCGGCGCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAGGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATg                                                                                         <  1:542619/136‑1 (MQ=255)                                             gAAGCGAAAGAAGATGAGGCAGTACATATCGGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGa                                                                                        <  2:895046/143‑1 (MQ=255)                                             gAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGCAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACAAATAAACACACCAGTAAGTGAGCAGAtac                                                                                        >  1:58405/1‑141 (MQ=255)                                                gCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAAt                                                                                     >  2:703245/1‑143 (MQ=255)                                                  gAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATaa                                                                                   >  1:588034/1‑143 (MQ=255)                                                  gAAAGAAGATGAGCCAGAACACATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATaa                                                                                   <  1:536367/143‑1 (MQ=255)                                                   aaaGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAAc                                                                                  <  1:964110/143‑1 (MQ=255)                                                   aaaGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAAc                                                                                  <  1:964184/143‑1 (MQ=255)                                                   aaaGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCACCTGTTGAAGCAATAAGGAAGATGAGAAGAATTATGAGAAAAGAGCTGCGGCGCCGAAAGTAGTCAACAATAAAACCACACGTAAGTGAGCCGACGAAATAAc                                                                                  >  1:941971/1‑143 (MQ=255)                                                    aagaagATGAGCCAGTACAGATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAAcc                                                                                 <  2:61740/143‑1 (MQ=255)                                                     agaagaTGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCa                                                                                >  2:992808/1‑143 (MQ=255)                                                     agaagaTGAGCCAGTACATAACAGGGACAAAATCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAAccc                                                                                >  1:603872/1‑142 (MQ=255)                                                           tGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACAtt                                                                          >  2:934593/1‑143 (MQ=255)                                                           tGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATAACGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGGCCAAAGTAGTCAGCAATAAACCCACCAGTAAGTGAGGCGATGAAAGGACGCAACAtt                                                                          >  2:187074/1‑143 (MQ=255)                                                              gCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGCCGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAAt                                                                       <  2:142642/143‑1 (MQ=255)                                                                         tCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCAATGAAATAACCAAACATTAATGCCGAGGTaaa                                                            >  1:887294/1‑143 (MQ=255)                                                                          cAGGGACAAAAGCGGCCCCTGTGGCAGCAAGACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAg                                                           <  1:522086/143‑1 (MQ=255)                                                                           aGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAgg                                                          >  2:588269/1‑143 (MQ=255)                                                                             ggACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCAAAACGCCCTGCGCCGCCCAAAGTAGTCACCGATAAACCCACCAGTAACTGAGCCGATGAAAAAACCAAACATTACCGCACAGGTAAAcgcg                                                        >  1:254747/1‑143 (MQ=255)                                                                                      cGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCAGTGAgg                                               >  2:639742/1‑143 (MQ=255)                                                                                       ggCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGa                                              <  1:217759/143‑1 (MQ=255)                                                                                        gCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGaa                                             >  2:412019/1‑143 (MQ=255)                                                                                          cccTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTCAGCCGATGAACTAACCAAACATTAATGCCGAGCTAAAGGCGGCATTGAGGAAat                                           >  1:483850/1‑143 (MQ=255)                                                                                           ccTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAGAGTAGTCCCCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACCTTAATGCCGAGGTAAAGGCGGCATTGAGGAAatt                                          >  2:701296/1‑143 (MQ=255)                                                                                           ccTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAatt                                          >  2:422004/1‑143 (MQ=255)                                                                                               ttGCAGCAACACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTAttt                                      <  2:472381/143‑1 (MQ=255)                                                                                                   agcaATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATCATTTGAcc                                  >  2:1115604/1‑143 (MQ=255)                                                                                                     caATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGAccat                                <  1:992808/143‑1 (MQ=255)                                                                                                          ccGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACGATCCAtt                           >  2:1040388/1‑143 (MQ=255)                                                                                                           cgactgtGAGAAGATTTATGTGAAACCCCCTGCGCGGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTg                          <  2:140772/137‑1 (MQ=255)                                                                                                           cgacgaTGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCCTTGAGGAAATTATTTGCCCATCCATTg                          >  2:1037389/1‑143 (MQ=255)                                                                                                            gccgaTGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGc                         <  2:960093/141‑1 (MQ=255)                                                                                                            gacgaTGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACAAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGc                         >  1:1093751/1‑143 (MQ=255)                                                                                                               gaTGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCAATGAGGAAATTATTTGACCATCCATTGCTTa                      <  2:588034/143‑1 (MQ=255)                                                                                                                   agaagaTTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAg                  >  2:274563/1‑143 (MQ=255)                                                                                                                       gaTTTATGCCAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCAGCCATTGCTTACCAGCttt              <  2:93517/143‑1 (MQ=255)                                                                                                                       gaTTTAAGCCAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCCGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCttt              <  1:101396/143‑1 (MQ=255)                                                                                                                        tgtaatccgcaaCGCCCTGCGCTGCCCAAAGTAGGCACCGATACACCCACTAGTAAGTGAGCCGATGAAATGACCAATCATTAGGGCCGAGGTAAAGGCGTCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTg             <  1:192623/133‑1 (MQ=255)                                                                                                                         tttATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAAGTATTCGACCGTCCATTGCTTACCAGCTATga            >  1:1144772/1‑142 (MQ=255)                                                                                                                             tGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAg        >  2:111361/1‑143 (MQ=255)                                                                                                                                   tcGCCCTGCGCCGCCCAAAGTAGATCCCAATTAACCAACACCTAAGTCTTCCGATGAAATAACCAAACATAAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACa  <  1:687996/142‑1 (MQ=255)                                                                                                                                         |                                                                                                                                         GCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACA  >  NC_000913/1853582‑1853854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.