| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1853718 = | 56 (0.840) | 4 (0.060) | 4/276 | 9.6 | 7.5% | coding (262/1359 nt) | ydjE | putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | = 2173995 | 44 (0.680) | pseudogene (282/914 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS,transport, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system galactitol‑specific enzyme IIC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGGTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCC > NC_000913/2173855‑2174132 | ccGGTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTg > 2:957611/1‑143 (MQ=255) gTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGa > 2:609756/1‑143 (MQ=255) ttGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCACTCGGAATCGCCACCAGCGCAATTTGCgcc > 2:816152/1‑141 (MQ=255) ccggATGCAGCAACGCGCGGGTGAAGGGCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTGACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGcc < 2:875125/140‑1 (MQ=255) ccAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGCATCGCCAACAGCGCATATTTCGTCGcc > 1:542/1‑143 (MQ=255) ccAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCCATTTGCGACGcc > 2:669927/1‑143 (MQ=255) gATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAg < 2:867477/143‑1 (MQ=255) gATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAg < 1:609756/143‑1 (MQ=255) agcaACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCACTTTGCGGCGCCACGGTcct > 1:474063/1‑141 (MQ=255) agcaACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACACCACCACGTTAACCAGAATCGCAATCGGAACCACCACCAGCGCAATGAGCGACGCCACGGTCAt > 1:405832/1‑143 (MQ=255) gcaACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCCGCGCAACTTGCGACGCCCAgaccctt > 1:273892/1‑137 (MQ=255) aaCGCGCCGGTGAAGGTCATATGCCAGATATTACATATATCAACCTTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTgg < 1:674038/143‑1 (MQ=255) cgcgCCGGTGAAGGTGACATGCCAGATATTCCAGATCTCAACAGTGCCCTCCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGCATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTg < 2:1029824/143‑1 (MQ=255) cgcCGGTGAAGTTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGaa < 1:1033628/143‑1 (MQ=255) cgcCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGaa < 1:673062/143‑1 (MQ=255) ccGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAaga < 2:1003371/143‑1 (MQ=255) tCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGgccag > 2:812713/1‑143 (MQ=255) cATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCCATCGGACTCGCCACCACCGCAATTTCCGACGCCCACGCCATTGGCGCAGAGCCCGgcccgc > 2:29212/1‑143 (MQ=255) tGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAAc < 2:416504/143‑1 (MQ=255) cAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTCACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGACGAGGGGGTGGGTCGAGAGCCCGCCCAGCCAACATc > 1:813344/1‑143 (MQ=255) aGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAATCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑g < 2:276967/143‑1 (MQ=255) aGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCACAATCCCAATCGGAAACGCCACCAGCGAAAATTGCGACGCCCAGGACAATGCGGAAAAGACCgcaccgccaccagcg > 1:90009/1‑129 (MQ=255) ccAGATATCAACATTTACCACCCGCGTCATACCGGTCAGTAACATCGCCACATTAACCAGAATTGCAATCGAAAGCGCCACAAGCGCAATTTGAGACGCCCAGGTCATAGGTGCAGAGCCCGGCCAGCCAGCACC‑GACCACAt > 1:607129/1‑143 (MQ=255) cAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATAGCCACCAGCGCAATTTGCGACGCCCAGGTCATGGGTGAAGAGACCGGCCAGCCAACATC‑GAACACATg > 2:944380/1‑143 (MQ=255) atatCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGATGGGCCCGGGCCGCCAACAAC‑GGCCATACGCAg > 2:77751/1‑143 (MQ=255) aaCATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGGTTCa > 2:54994/1‑143 (MQ=255) aCATTTACCACCCGCGTCATACGGGCCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAg < 1:957611/143‑1 (MQ=255) ccGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACCCCCAGGTCATTGGTGAAGAGCCCGGCCCGCCAACATC‑GACCACATGCCGACTCCGGCCGAACtttt > 2:535842/1‑143 (MQ=255) ccGCGTCATACGGGTCAGTAACATCGCCAAGTTAACCAGAATCGCAATCGGAATCGCCACACGCGCAATTTGCAACGCCCAAGGCATTGGTGAACAGCCCGGCCAGCCAAAATCAGACGCCA‑GCAGAATCAAGACGAAActtt > 1:979518/1‑143 (MQ=255) gcgTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAAGCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTcc < 2:474063/143‑1 (MQ=255) gcgTCAGACGGGTCAGTAACATCGCCACGTTAACCAGCATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGGCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCTCATGCAGATTCAGGTCGAAATTTTcc < 1:582545/143‑1 (MQ=255) tACGGGTCAGGACCACCGCCACGTTAACCACAACCGCAATCGGAAGCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATc < 2:1073791/143‑1 (MQ=255) gggTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGCTTCAGGTCGAAATTTTCCGCCATCGCt > 2:594845/1‑143 (MQ=255) gccAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGCGGACACTTTCCGCCATCGCttg > 1:719802/3‑142 (MQ=255) tAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCAATGGCGAAGAGCCCGGCCAGCCAACATC‑AACCACATGCAGGATCAGGTCGAAATCTCCCGCCATCGCTATcgccc > 1:343619/1‑142 (MQ=255) gCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTCCGACGCCCAGGTCGTTGATGAAGAGCCCGGCCAGCCACCCTC‑GACCACATGCAGCTCCAGGTCCACATTTTGCGCCATCGCTTTCGCCCCCCGGcc > 2:391928/1‑143 (MQ=255) aaCCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGACATTTTCCGCCATCGCTTTCGCCGCCGGGCCACTGGCAt > 1:178627/1‑143 (MQ=255) aCCAGAACCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCCGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATc < 2:716812/143‑1 (MQ=255) ccAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATcc > 2:680518/1‑143 (MQ=255) cAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCa > 2:1086561/1‑143 (MQ=255) aaTCGCAATCGGGATGTCCACCACCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGAGTCATGTCGAAATTTTCCGCCATCGCTTTCGCTGCCGGGCCAATGGAATCCAGCa < 1:390587/143‑1 (MQ=255) ggAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAAt > 2:882290/1‑143 (MQ=255) cGCCACCAGCGCAATGCGCGACGCCCAGGTTGTGGGTGAAGAACCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCAGCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACaa < 2:212185/143‑1 (MQ=255) ccaccaGCGCAATTTGCGACGCCCAGGTCATAGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGAGGCAGGACGAAATGTTCAGCCATACCTATCGCCGCCAGGCGAAAGGAAACCCGCAATCAACCAATAAAAAgg > 1:622414/1‑143 (MQ=255) gcgcAATCGGCGCCGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCCACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATg < 1:434538/143‑1 (MQ=255) cgcAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGc > 2:882401/1‑143 (MQ=255) gcAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAAGCTGCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGcc > 2:663809/1‑143 (MQ=255) | CCGGTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGGTGAAGAGCCCGGCCAGCCAACATC‑GACCACATGCAGATTCAGGTCGAAATTTTCCGCCATCGCTTTCGCCGCCGGGCCAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCC > NC_000913/2173855‑2174132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |