New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	5 (0.080)	56 (0.860)	47/278	0.3	92.0%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

TTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC  >  NC_000913/607877‑608147                                                                                                                                       |                                                                                                                                         tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCt                                                                                                                                  >  1:805657/1‑143 (MQ=255)        gTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                           >  2:694159/1‑143 (MQ=255)         tGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTCATATTGAGTTTAAGGCTGATCTCGCTTACGAACCGAAGCAGTAGCCGATGTGCGAGGAGCAATCCCATAAGCGCAAAGCTAAg                                                                                                                          >  1:650831/1‑143 (MQ=255)         tGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGGTTAAGGGTGTTATCGCGTACTAACCGACGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAAGTTCAg                                                                                                                          >  2:1150696/1‑143 (MQ=255)         ggCTGGGAGTTAGGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                                          <  1:764807/142‑1 (MQ=255)            tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTTAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTACCTTCAGGGt                                                                                                                       >  2:1064847/1‑143 (MQ=255)                aTTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGAGAACCTAAGGGTtgtg                                                                                                                   >  1:433976/1‑143 (MQ=255)                  ttACGTTTCTGATTGGAGACTGGCTGTGTGAGTTTACGTTGAAGGAACGTAATATTGAGTTTAATGCTGTTCTCGCTTACGTACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCTTAAGCGCTAACTTAAGGGTTGTGGt                                                                                                                 <  1:309414/143‑1 (MQ=255)                     cGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAAAATTGACTTTAAGCCTGTTGTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGAGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt                                                                                                              <  1:294822/143‑1 (MQ=255)                      gCTTCTGGTCGGGGCCCCGCTGTGTGAGTTTCCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                             <  2:134073/143‑1 (MQ=255)                        ttCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg                                                                                                           >  2:36232/1‑143 (MQ=255)                              tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGACGTAGCCGTTCTGCGGGCATTAATCCCATAACCGCTAACTTAACGGTTCTCGTATTACGcatcat                                                                                                     >  2:959025/1‑138 (MQ=255)                              tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTCAGGGTAGTGGCACTACGCCCGat                                                                                                     >  1:1112114/1‑143 (MQ=255)                              tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat                                                                                                     >  2:191634/1‑143 (MQ=255)                               cGGAGACTCGCTGTGTGAGTTTCCCGTGACGGTGCGGAATATTGCGCTTAAGGAAGAATTTGCTTACGACCGGTAGAAGTGGCCGTTGTGCGGGGAGGAATTCTATACGGGCTAAGTTAAGGGGTGTGGGACTACGTCTGagc                                                                                                    >  1:245174/1‑141 (MQ=255)                                   gattgccTGTGGGAGTTTAGGCTGACGGAGCGGAATATTGAGTTTACGGCTGTTCGCGCTTACGAACCGAACAAGTAGCTTGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                <  1:747078/137‑1 (MQ=21)                                      tCGTTGTGTGAGTTGACGGTGGAGAGACGTAATATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                             <  1:889972/143‑1 (MQ=37)                                      tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                             >  1:582555/1‑143 (MQ=255)                                       cGCTCTGTGACTTTACGGTGAAGGAACGTAATATTGAGTTCAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                                                                                            <  2:140700/143‑1 (MQ=255)                                           gtgtgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg                                                                                        <  1:649549/143‑1 (MQ=255)                                            tgtgAGTTTACGGTGAAGGAACGTAATATTCAGCTCGCACTTTTTCTCCCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                                       <  1:509016/143‑1 (MQ=25)                                              tgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAGTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg                                                                                     >  2:1032132/1‑143 (MQ=255)                                                ggTTTACGGTGAAGCAGCGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                   <  1:696752/142‑1 (MQ=255)                                                 gTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGGAGAAGTAGCCGTTGGGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg                                                                                  <  1:348680/143‑1 (MQ=255)                                                   ttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTCCAGAAGAAAATTTAGAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                                <  2:842453/143‑1 (MQ=21)                                                     aCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTATGATACAACGTGCCGATGCAtt                                                                              >  1:1058326/1‑143 (MQ=255)                                                     aCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                              >  2:550196/1‑143 (MQ=255)                                                        gTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                           >  2:185666/1‑143 (MQ=255)                                                             ggAACGGAATATTGAGCTGAGGGCTGGGCGCGCGTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                      <  2:194109/143‑1 (MQ=21)                                                              gAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGAGCTAACATAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActctgtcg                                                                     >  2:101186/1‑139 (MQ=255)                                                                aCGTAATGTGGAGTTTAAGGCGGGTCTCGCTTAGGAACCGAAGAAGTAGCCGTTGGGCGGGGGGTAATCCCATAAGCGCGAACTTAAGGGTTGTGGTATTACGCATGATATGATTTAACGTGCCGATGAATTACTCTCACGAt                                                                   <  2:415944/143‑1 (MQ=21)                                                                    aaTATTGAGTTCAAGGCTGTTCTCGCTTACGAACCGAAGAAGTCGCCGTTGTGCGGGGAGTAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACt                                                               <  2:430442/143‑1 (MQ=255)                                                                    aaTATTGAGGTTAAGGCTGTTCTCGCTTACGCACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACt                                                               <  1:969348/143‑1 (MQ=255)                                                                        ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGATGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTCACGTGCCGATGAATTACTCTCACGATAACTGGTc                                                           <  2:418484/143‑1 (MQ=255)                                                                        ttGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACATAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTc                                                           <  1:579771/143‑1 (MQ=255)                                                                         tGAGTTTAAGTCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                          <  2:714342/143‑1 (MQ=255)                                                                             tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCGCGATAACTGGGCAGCaa                                                      >  1:1114150/1‑143 (MQ=255)                                                                             tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGACTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                      >  1:199553/1‑143 (MQ=255)                                                                                   gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAGTACTCTTACGATAACTAGTTAGCAAGTcgtg                                                >  1:857186/1‑140 (MQ=21)                                                                                         ctcGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTATGATTTAACGTGCCGATGAATTAATCTGACGATAACTGGTCAGCAATTCTCGCCCaga                                          >  1:341155/1‑141 (MQ=255)                                                                                         ctcGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCata                                          >  2:942/1‑143 (MQ=255)                                                                                               tACGAACCGAAGAAGTAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTa                                    <  1:829885/143‑1 (MQ=255)                                                                                                 cGAGCCGGAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAg                                  <  1:45583/143‑1 (MQ=255)                                                                                                   aaCCGACGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGcc                                <  2:1119288/143‑1 (MQ=255)                                                                                                    atcGAAGAAAGAGCCACTGTGCGGAGAGTAATCCCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGccc                               <  2:328957/141‑1 (MQ=14)                                                                                                     ccGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCAATATTGGTAAGACCg                              >  1:212494/1‑143 (MQ=255)                                                                                                       gaagaaGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaa                            <  2:1104308/143‑1 (MQ=255)                                                                                                       gaagaaGTAGCCGGTGTGCGGGGTGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATGTAACGTGCTTATGAATTACTCTCACGATATCTGGTCAGCAATTCTGGCCCATATTGGTAAGCACgaa                            <  1:573700/143‑1 (MQ=17)                                                                                                        aagaagTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGACTTGATTTCACGTGCCGATGAATTACTTTCACGATAACTGGTAAGAAATTCTAGCCCAAATTGGTAAACCCgaag                           >  2:1066610/1‑143 (MQ=17)                                                                                                           aagTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAAc                        <  2:52841/143‑1 (MQ=255)                                                                                                            agTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                       <  1:550196/143‑1 (MQ=255)                                                                                                              tggCCGTGGTGCGGGAAGTAATCCCATATGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                     <  2:710563/141‑1 (MQ=255)                                                                                                                    ttGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACtt               <  2:1001607/143‑1 (MQ=40)                                                                                                                        gCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGc           <  2:805657/143‑1 (MQ=37)                                                                                                                          ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCCTATTGGTAAGCCCGAAGAACTGGATACTTCGGCAc         >  2:1051591/1‑143 (MQ=37)                                                                                                                          ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGCTACGCCCGAAGAACTGGATACTCCGGCAc         >  1:909235/1‑143 (MQ=255)                                                                                                                              aGTAATCCCGTAGGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa     <  2:387473/143‑1 (MQ=16)                                                                                                                                tAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACCTCGGCTCGTAAtc   >  2:325658/1‑142 (MQ=17)                                                                                                                                 aaTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGc  >  2:160448/1‑143 (MQ=31)                                                                                                                                       |                                                                                                                                         TTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC  >  NC_000913/607877‑608147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.