New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2290111NA (NA)68 (1.020) 57/284 0.1 94.4% intergenic (‑32/+1) insH1/yejO IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system
?NC_000913 4049890 = 4 (0.060)intergenic (+139/‑8) polA/spf 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

Only 100 of 151 total aligned reads displayed.

CTAAGATTCGCCTGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATG  >  NC_000913/4049748‑4050032
                                                                                                                                              |                                                                                                                                              
cTAAGATTCGCCTGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCGGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGt                                                                                                                                                <  1:298506/143‑1 (MQ=255)
 tAAGATTCGCCTGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGtt                                                                                                                                               <  1:642687/143‑1 (MQ=255)
   aaaatagccaaaaCATGCATTTTTTCGTAAGTAAGAAACAGAAGCTGTCACGATTGGTGATGGCTATTAGAAATTCCTATGAAACAACAGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAg                                                                                                                                             <  1:699308/132‑1 (MQ=255)
         gCCTGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaagg                                                                                                                                       <  2:497379‑M2/143‑7 (MQ=255)
            tGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgc                                                                                                                                    >  1:116003‑M2/1‑134 (MQ=255)
             gAACATGCCTTGTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcga                                                                                                                                  >  2:568735‑M2/1‑132 (MQ=255)
              aaCATGTCTTTTTTCGTAAGTAAGCAACATAAGTTGTCATGTTTTGGGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcga                                                                                                                                  >  2:671744‑M2/1‑132 (MQ=255)
                  tGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgactaa                                                                                                                              <  2:1002191‑M2/143‑16 (MQ=255)
                    ctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACagag                                                                                                                            >  2:861427‑M2/123‑143 (MQ=255)
                     cTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcg                                                                                                                           <  2:266683‑M2/143‑19 (MQ=255)
                      tttttaCGTAAGTAAGAAACATAAGCTGTAACGTTTTGTAATGGCTATTAAAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcgg                                                                                                                          >  1:387310‑M2/1‑124 (MQ=255)
                       tttttCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggg                                                                                                                         >  2:763976‑M2/1‑123 (MQ=255)
                       acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTa                                                                                                                         <  2:593950‑M2/24‑1 (MQ=255)
                        cgccgcttactgctgtattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatcgctccagatgacaaacatgagctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTaa                                                                                                                        <  2:654402‑M2/25‑1 (MQ=255)
                            gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATg                                                                                                                    >  1:927814‑M2/115‑143 (MQ=255)
                             gtaagtaaGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAGTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTCAAGTTAGagaaaatacgaataagcggggaaatt                                                                                                                   <  2:309128‑M2/143‑27 (MQ=255)
                              ttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttggggtctgccATAGTCGCGTAGGGTACAGAGGTAAGATGtt                                                                                                                  >  2:481606‑M2/113‑143 (MQ=255)
                              ttactgctgaatccacggtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgtccgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGtt                                                                                                                  <  2:753361‑M2/31‑1 (MQ=255)
                                  taagCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAGAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgcataagcgtggaaatgcttct                                                                                                              <  2:460316‑M2/143‑32 (MQ=255)
                                    ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatatcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGCTCTATCt                                                                                                            >  1:30085‑M2/107‑143 (MQ=255)
                                     tgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatctcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTACTATCtt                                                                                                           >  1:73099‑M2/106‑143 (MQ=255)
                                      gaattcacggtcggcgaaggtaagttgatgactcattatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctttcTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCttt                                                                                                          <  1:541273‑M2/39‑1 (MQ=255)
                                      gaagtcgctgtcggcgatggtaagttgatgactcatgatgatccctgttctatggctccagatgacaaacatgatctcatatcagggactggttcgcaccttccTTTGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCttt                                                                                                          <  1:765206‑M2/39‑1 (MQ=255)
                                       aattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTc                                                                                                         <  1:670817‑M2/40‑1 (MQ=255)
                                       aaCATAAGAAGTAACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggct                                                                                                         >  1:1145254‑M2/1‑107 (MQ=255)
                                        attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGAACAGAGGTAAGATGTTCTATCTTTCa                                                                                                        >  1:916478‑M2/103‑143 (MQ=255)
                                         ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAg                                                                                                       >  1:1043024‑M2/102‑143 (MQ=255)
                                         ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGAAGTACGATCTTTTAg                                                                                                       >  2:424759‑M2/102‑143 (MQ=255)
                                              tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCtt                                                                                                  <  2:596946‑M2/47‑1 (MQ=255)
                                              gCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag                                                                                                  <  2:1117862‑M2/143‑44 (MQ=255)
                                               ctgacacgtagagcgatggctaatagaaaTTCCTATGCAACAACAGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagt                                                                                                 >  1:989435‑M2/15‑99 (MQ=255)
                                                 cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagattacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTa                                                                                               <  1:627175‑M2/50‑1 (MQ=255)
                                                  tCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                              <  2:115224‑M2/143‑48 (MQ=255)
                                                  ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTAc                                                                                              >  1:758384‑M2/93‑143 (MQ=255)
                                                         gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCCCGt                                                                                       >  2:704742‑M2/86‑143 (MQ=255)
                                                           aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTaa                                                                                     <  1:625199‑M2/60‑1 (MQ=255)
                                                             gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATc                                                                                   <  2:927814‑M2/62‑1 (MQ=255)
                                                             aattgccactagaaattccTATGCAACAACTAAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc                                                                                   >  1:270255‑M2/10‑85 (MQ=255)
                                                              aTGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttca                                                                                  <  1:379478‑M2/143‑60 (MQ=255)
                                                              aTGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgacgcagtcatttcatttcttca                                                                                  <  1:242184‑M2/143‑60 (MQ=255)
                                                                gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagagacttgttcgcaccttccTTAGTCTCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAAtcgta                                                                                <  1:574580‑M2/65‑3 (MQ=255)
                                                                  cTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt                                                                              <  1:425522‑M2/143‑64 (MQ=255)
                                                                   tATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                             <  2:403537‑M2/143‑65 (MQ=255)
                                                                    aTTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                                                                            >  2:916286‑M2/1‑78 (MQ=255)
                                                                     ttAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga                                                                           <  2:311735‑M2/143‑67 (MQ=255)
                                                                      tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCttt                                                                                                 <  2:939789‑M2/48‑1 (MQ=255)
                                                                      tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCttt                                                                                                 >  1:939789‑M2/73‑120 (MQ=255)
                                                                      tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGc                                                                          >  2:741565‑M2/73‑143 (MQ=255)
                                                                        gAAAGTCCTATGCAACAACTGAAAAAAAATTACAAAAACTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                                                                        >  1:525478‑M2/1‑74 (MQ=255)
                                                                         aaaTTCCAATGCAACAACAGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                                                                       >  1:226422‑M2/1‑73 (MQ=255)
                                                                          gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGaa                                                                      <  2:934557‑M2/75‑1 (MQ=255)
                                                                                tATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                <  1:25694‑M2/143‑78 (MQ=255)
                                                                                ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATAtttt                                                                >  1:845843‑M2/63‑143 (MQ=255)
                                                                                  tGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct                                                              <  2:950347‑M2/143‑80 (MQ=255)
                                                                                  ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAg                                                              <  2:1074989‑M2/83‑1 (MQ=255)
                                                                                  ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAg                                                              <  2:900754‑M2/83‑1 (MQ=255)
                                                                                   tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAgc                                                             <  2:155291‑M2/84‑1 (MQ=255)
                                                                                   tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGCAGGGTACAGAGGTAGGATGTTCTCTCTTTCAGACCTTTTACTTCACGTAAGCGGATTGGGCTGAAAACATTAgc                                                             >  2:776449‑M2/60‑143 (MQ=255)
                                                                                    caacaaCTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc                                                            >  2:816909‑M2/1‑62 (MQ=255)
                                                                                     aacaacTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc                                                           <  2:663535‑M2/143‑83 (MQ=255)
                                                                                       ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAgccgcc                                                         >  1:587282‑M2/56‑143 (MQ=255)
                                                                                       cggtggctccagatgaccagcaggatctcagagcagggacctgtgcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGTCCTTTTACTTCACGTAATCGGCTTTGGCTGAATATTTTAgccgcc                                                         <  1:271428‑M2/88‑1 (MQ=255)
                                                                                         atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTCGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGcccc                                                       >  2:1036847‑M2/54‑143 (MQ=255)
                                                                                         acTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa                                                       <  1:643385‑M2/143‑87 (MQ=255)
                                                                                            gctccagatgacaaacatgatctcatatcagtgacttgttcgcactttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagt                                                    <  2:930463‑M2/93‑1 (MQ=255)
                                                                                            gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagt                                                    <  1:849550‑M2/93‑1 (MQ=255)
                                                                                            gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagt                                                    <  2:334481‑M2/93‑1 (MQ=255)
                                                                                             aaaaaaaaTTAGAAAAAGTGCCTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc                                                   >  2:232275‑M2/1‑53 (MQ=255)
                                                                                             aaaaaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgcttttttctcccgtaaatgc                                                   <  2:333773‑M2/143‑91 (MQ=255)
                                                                                              tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagtca                                                  >  1:425412‑M2/49‑143 (MQ=255)
                                                                                               ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGAACTTTGAGTTCACGTAATCGGATTTGGCTGAATATTTTAGGCAGCcccgtcat                                                 >  1:128373‑M2/48‑142 (MQ=255)
                                                                                                aataatGACGAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                >  1:228971‑M2/1‑50 (MQ=255)
                                                                                                aaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                >  2:425522‑M2/1‑50 (MQ=255)
                                                                                                   aaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttttagccgattttttctcccgtaaatgccttgaa                                             >  1:1134298‑M2/1‑47 (MQ=255)
                                                                                                       aaaaaatgtGCTTTCCGCACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcgggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc                                         >  1:111281‑M2/3‑43 (MQ=255)
                                                                                                       aCAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcag                                         >  1:161186‑M2/1‑43 (MQ=255)
                                                                                                          acatgatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTggg                                      <  1:807403‑M2/107‑1 (MQ=255)
                                                                                                              gatctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGt                                  >  2:650133‑M2/33‑143 (MQ=255)
                                                                                                              gTCCTTTAGGAACTGAACAAAAAAGAGTTAAGTTAGtgaatgtgcgaataagcggtgaaattcttctcggctaactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                  >  1:917968‑M2/1‑36 (MQ=255)
                                                                                                                 ctcatatcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGCATTTGGCGGCCTATTTTAGCCGCCACAGTCCGTTCTGACCGGGGCgtttg                               >  2:509768‑M2/30‑142 (MQ=255)
                                                                                                                 cTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttaga                               >  2:131318‑M2/1‑33 (MQ=255)
                                                                                                                 cTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttaga                               >  1:1046483‑M2/1‑33 (MQ=255)
                                                                                                                       tcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTg                         >  2:807492‑M2/24‑143 (MQ=255)
                                                                                                                       tcagggacttgttcgcaccttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTg                         <  2:624123‑M2/120‑1 (MQ=255)
                                                                                                                        aactgaacAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcaggctatttagaccgtttc                        <  2:774657‑M2/143‑118 (MQ=255)
                                                                                                                        aactgaacAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttc                        >  1:770990‑M2/1‑26 (MQ=255)
                                                                                                                             aacAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggacattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattctttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgc                   >  1:714446‑M2/1‑21 (MQ=255)
                                                                                                                               cAAAAAAGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcca                 <  1:981380‑M2/143‑125 (MQ=255)
                                                                                                                                 aaaaaGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatt               <  2:761367‑M2/143‑127 (MQ=255)
                                                                                                                                 aaaaaGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatt               <  2:461349‑M2/143‑127 (MQ=255)
                                                                                                                                  aaaaGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattt              >  1:781074‑M2/1‑16 (MQ=255)
                                                                                                                                    aaGAGTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatccgcctatttagaccgtgtcttcgccatttaa            <  2:217780‑M2/143‑130 (MQ=255)
                                                                                                                                     agagTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaag           >  2:643385‑M2/1‑13 (MQ=255)
                                                                                                                                       accttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc         >  2:242172‑M2/8‑143 (MQ=255)
                                                                                                                                        gTAAAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcg        <  2:365256‑M2/143‑134 (MQ=255)
                                                                                                                                          ttccTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGt      <  1:807492‑M2/139‑1 (MQ=255)
                                                                                                                                           aaGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtta     <  2:648296‑M2/143‑137 (MQ=255)
                                                                                                                                            aGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttat    >  1:115224‑M2/1‑6 (MQ=255)
                                                                                                                                              ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgctagcc  <  2:911344‑M2/143‑140 (MQ=255)
                                                                                                                                              ttAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATg  >  1:1022651/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
CTAAGATTCGCCTGAACATGCCTTTTTTCGTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATG  >  NC_000913/4049748‑4050032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.