Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 55 [0] [0] 54 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)48 (0.780) 43/264 0.4 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999
                                                                                                                                              |                                                                                                                                              
aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTCTGCCAGCGCCGCCTTGTGC                                                                                                                                                >  1:193931‑M1/1‑143 (MQ=255)
   acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                                                             >  1:1081333‑M1/1‑140 (MQ=255)
      tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          >  2:576746‑M1/1‑137 (MQ=255)
      tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          >  2:356168‑M1/1‑137 (MQ=255)
           gctAAGCGCAAATCCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  2:79727‑M1/143‑12 (MQ=255)
            ctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                    >  2:14049‑M1/1‑131 (MQ=255)
             tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAGAAATCAGTTAGCCAGCGCCGCCTTCTCAcgtcccctgcact                                                                                                                                   >  1:72787‑M1/1‑130 (MQ=255)
              aaGCGCAAATTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                  <  2:932898‑M1/143‑15 (MQ=255)
                 cgcAAATTCAATAAACTGGCGCTGATATGGTTCCATGCATCCGCTCCTACTTTGACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  2:789003‑M1/143‑18 (MQ=255)
                    aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCCTCGCTCATCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            <  2:507472‑M1/143‑21 (MQ=255)
                           aTAAGCTGTCGCTGTTGTGGTTTCATGCCTTCGCTCTTTATCTTACTTTTCTACAGACAAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                     <  1:560366‑M1/143‑28 (MQ=255)
                           aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACCCATCAGTCACCTTAAAAATCAGTTTGCAAGGGCCGCCTTCTGCcatccccaacacttcaatgacgcgccc                                                                                                                     >  1:480127‑M1/1‑116 (MQ=255)
                                   gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctccccccgtcttcgg                                                                                                             >  1:220206‑M1/1‑108 (MQ=255)
                                     gcTGATATTGTTTCATGCCTTCGCTCCTCATCTTACTCTTCTACAGACAAAAAAAAGGCGACTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  2:107058‑M1/143‑38 (MQ=255)
                                     gcTGATATGGTTCCCTGGCTGCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  1:452864‑M1/143‑38 (MQ=255)
                                        gctacgggttcatgccctCGCCCCTCATCTTACTTCTCTACAGCCATCAAAAAGGCGACTCATCAGTCGCCTCAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatc                                                                                                        <  2:494866‑M1/135‑41 (MQ=255)
                                           atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     >  2:1005522‑M1/1‑100 (MQ=255)
                                            gggtTTCATGCCCTCGCTCCCCCTCTCAAATTCTTTCGGTCTAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacta                                                                                                    <  2:896554‑M1/142‑45 (MQ=255)
                                              gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                  <  2:452316‑M1/143‑47 (MQ=255)
                                                ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                >  2:515165‑M1/1‑95 (MQ=255)
                                                 tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  2:882851‑M1/143‑50 (MQ=255)
                                                  cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcaccacgttca                                                                                              >  2:271093‑M1/1‑93 (MQ=255)
                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             <  2:89840‑M1/143‑52 (MQ=255)
                                                    tGCCTTCGCTCCTCCTCTTACTCTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTCCTGCcgtcccctgcacttcaatgatgcccccgtcttcggtcatcactacgttcatg                                                                                            <  2:442986‑M1/143‑53 (MQ=255)
                                                       cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         >  1:450799‑M1/1‑88 (MQ=255)
                                                             tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGAGAGCGCCGCCTTCTGCcgtcccctgcacttcaatactgcccccgtcgtcggtcatcactacgttcacgtcgctccct                                                                                   >  1:1124800‑M1/1‑82 (MQ=255)
                                                              cctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg                                                                                  <  2:272833‑M1/143‑63 (MQ=255)
                                                                 cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcgg                                                                               >  2:469653‑M1/1‑78 (MQ=255)
                                                                 cATCGTACTTTTCTACAGTCTATAAAAATGCGACTCATCAGTCGCCTTAAAAATCATTTTGTCAGCGCCGCCTTCTGCcgtcgccggcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                               <  2:190503‑M1/143‑66 (MQ=255)
                                                                     ttACTTTTCTACAGACAAAACAAAGCCGAGTAATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcggcaga                                                                           >  1:520529‑M1/1‑74 (MQ=255)
                                                                     ttACTTTTCTACAAACCAAAGAACTGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  1:750054‑M1/143‑70 (MQ=255)
                                                                         ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCACCTTAAAAATCAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctgcgttcatgtcggtctctgcggcagagtct                                                                       >  2:944180‑M1/1‑70 (MQ=255)
                                                                              tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggccactccggcagagcctcccac                                                                  >  1:1037266‑M1/1‑65 (MQ=255)
                                                                               aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg                                                                 >  1:88258‑M1/1‑64 (MQ=255)
                                                                                       aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                         >  2:819857‑M1/1‑56 (MQ=255)
                                                                                        aaaaaGTCGCCCCATCAGTTGCTTTAAAAATTAGTTTGCCAGCTCCGCCTTCTGTcgcctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtctgtctctgcggcagagtcttcaacgtattccaga                                                        <  1:288377‑M1/143‑89 (MQ=255)
                                                                                           aaGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctcgggcggagtcttcaccgcactccagacgg                                                     >  1:425848‑M1/1‑52 (MQ=255)
                                                                                              gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcagtctctgcggcagagtcttcaacgtattccagatcgcaa                                                  >  2:188773‑M1/1‑49 (MQ=255)
                                                                                                   tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccagtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctgcaacgtattccagaacgcaaaccgc                                             >  2:126493‑M1/1‑44 (MQ=255)
                                                                                                     atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctccacttaaatgatgcacccgtcttcggtcctcactaccttcatgtccgtctctgcggccgactcttcaacgtcttccacatcgcacacccctt                                           >  1:146592‑M1/1‑42 (MQ=255)
                                                                                                        aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgctcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgctcagc                                        >  1:1107668‑M1/1‑39 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggctccaacgtattccagctcgcaacccgcctcgcc                                       >  1:1104734‑M1/1‑38 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggactctacgaaagagcatgcaacctattccagatcgcaaaccgcctggcc                                       >  1:238009‑M1/1‑38 (MQ=255)
                                                                                                          tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtactccagatcgccacccccctcgccg                                      >  1:807081‑M1/1‑37 (MQ=255)
                                                                                                          tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg                                      >  2:1047086‑M1/1‑37 (MQ=255)
                                                                                                              cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgcttcgccgttcc                                  >  2:243360‑M1/1‑33 (MQ=255)
                                                                                                              cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                  <  1:576746‑M1/143‑111 (MQ=255)
                                                                                                               ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatggcggtctctacggcagagtcttcaccgtatcccagctcgcaaaccgctggacctgtcac                                 >  1:844854‑M1/1‑32 (MQ=255)
                                                                                                                       cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  2:734021‑M1/143‑120 (MQ=255)
                                                                                                                                      gccGTCTGCcgtcccctgcacatcaatgaggcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta          <  2:440902‑M1/143‑135 (MQ=255)
                                                                                                                                       ttacgcaccgacccccgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctac         <  2:1062961‑M1/136‑136 (MQ=255)
                                                                                                                                       ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccaataaaaataccgacagaaacagcggctac         >  2:389566‑M1/1‑8 (MQ=255)
                                                                                                                                         ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctacca       >  2:859800‑M1/1‑6 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:1040612‑M1/143‑143 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:1039588‑M1/143‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815715‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: