Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 55 [0] [0] 54 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)48 (0.780) 43/264 0.4 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815800‑3816081
                                                                                                                                            |                                                                                                                                             
acctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt                                                                                                                                             >  1:1081333‑M2/141‑143 (MQ=255)
   tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                          >  2:576746‑M2/138‑143 (MQ=255)
   tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                          >  2:356168‑M2/138‑143 (MQ=255)
        gctaagcgcaaatccaatacactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                     <  2:79727‑M2/11‑1 (MQ=255)
         ctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                                                                    >  2:14049‑M2/132‑143 (MQ=255)
          taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgacgcatcagtcgccttagaaatcagttagccagcgccgccttctcaCGTCCCCTGCACt                                                                                                                                   >  1:72787‑M2/131‑143 (MQ=255)
           aagcgcaaattcaataaacgggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                  <  2:932898‑M2/14‑1 (MQ=255)
              cgcaaattcaataaactggcgctgatatggttccatgcatccgctcctactttgacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                               <  2:789003‑M2/17‑1 (MQ=255)
                 aaattcaataaactggcgctgatatggtttcatgccctcgctcatcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatga                                                                                                                            <  2:507472‑M2/20‑1 (MQ=255)
                        ataagctgtcgctgttgtggtttcatgccttcgctctttatcttacttttctacagacaaaaaacaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                     <  1:560366‑M2/27‑1 (MQ=255)
                        ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgacccatcagtcaccttaaaaatcagtttgcaagggccgccttctgcCATCCCCAACACTTCAATGACGCGccc                                                                                                                     >  1:480127‑M2/117‑143 (MQ=255)
                                gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGCTCCCCCCGTCTTCgg                                                                                                             >  1:220206‑M2/109‑143 (MQ=255)
                                  gctgatattgtttcatgccttcgctcctcatcttactcttctacagacaaaaaaaaggcgactcttcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                           <  2:107058‑M2/37‑1 (MQ=255)
                                  gctgatatggttccctggctgcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                           <  1:452864‑M2/37‑1 (MQ=255)
                                     gctacgggttcatgccctcgcccctcatcttacttctctacagccatcaaaaaggcgactcatcagtcgcctcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatc                                                                                                        <  2:494866‑M2/40‑1 (MQ=255)
                                        atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                     >  2:1005522‑M2/101‑143 (MQ=255)
                                         gggtttcatgccctcgctccccctctcaaattctttcggtctaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa                                                                                                    <  2:896554‑M2/44‑1 (MQ=255)
                                           gtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                  <  2:452316‑M2/46‑1 (MQ=255)
                                             ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                                >  2:515165‑M2/96‑143 (MQ=255)
                                              tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                               <  2:882851‑M2/49‑1 (MQ=255)
                                               catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACCACGTTCa                                                                                              >  2:271093‑M2/94‑143 (MQ=255)
                                                atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                             <  2:89840‑M2/51‑1 (MQ=255)
                                                 tgccttcgctcctcctcttactcttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctcctgcCGTCCCCTGCACTTCAATGATGCCCCCGTCTTCGGTCATCACTACGTTCATg                                                                                            <  2:442986‑M2/52‑1 (MQ=255)
                                                    cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                         >  1:450799‑M2/89‑143 (MQ=255)
                                                          tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgagagcgccgccttctgcCGTCCCCTGCACTTCAATACTGCCCCCGTCGTCGGTCATCACTACGTTCACGTCGCTccct                                                                                   >  1:1124800‑M2/83‑143 (MQ=255)
                                                           cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                                                                  <  2:272833‑M2/62‑1 (MQ=255)
                                                              catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCTCTGCgg                                                                               >  2:469653‑M2/79‑143 (MQ=255)
                                                              catcgtacttttctacagtctataaaaatgcgactcatcagtcgccttaaaaatcattttgtcagcgccgccttctgcCGTCGCCGGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                                                               <  2:190503‑M2/65‑1 (MQ=255)
                                                                  ttacttttctacagacaaaacaaagccgagtaatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCTCTGCGGCaga                                                                           >  1:520529‑M2/75‑143 (MQ=255)
                                                                  ttacttttctacaaaccaaagaactgcgtctcatcagtcgccttaaaaatcagtttgccagcgccgccttccgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                           <  1:750054‑M2/69‑1 (MQ=255)
                                                                      ttttctacagacaaaaaaaaggcgactcatcagtcaccttaaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTGCGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                       >  2:944180‑M2/71‑143 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCACTCCGGCAgagcctcccac                                                                  >  1:1037266‑M2/66‑138 (MQ=255)
                                                                            acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                                 >  1:88258‑M2/65‑143 (MQ=255)
                                                                                    aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                         >  2:819857‑M2/57‑143 (MQ=255)
                                                                                     aaaaagtcgccccatcagttgctttaaaaattagtttgccagctccgccttctgtCGCCTCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCTGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                        <  1:288377‑M2/88‑1 (MQ=255)
                                                                                        aaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTCGGGCGGAGTCTTCACCGCACTCcagacgg                                                     >  1:425848‑M2/53‑140 (MQ=255)
                                                                                           gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCAGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaa                                                  >  2:188773‑M2/50‑143 (MQ=255)
                                                                                                tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCAGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTGCAACGTATTCCAGAACGCAAACCGc                                             >  2:126493‑M2/45‑143 (MQ=255)
                                                                                                  atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTCCACTTAAATGATGCACCCGTCTTCGGTCCTCACTACCTTCATGTCCGTCTCTGCGGCCGACTCTTCAACGTCTTCCACATCGCACACCCCtt                                           >  1:146592‑M2/43‑143 (MQ=255)
                                                                                                     agtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAAccgctcagc                                        >  1:1107668‑M2/40‑139 (MQ=255)
                                                                                                      gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTCCAACGTATTCCAGCTCGCAACCCGCCTCGcc                                       >  1:1104734‑M2/39‑143 (MQ=255)
                                                                                                      gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGACTCTACGAAAGAGCATGCAACCTATTCCAGATCGCAAACCGCCTGGcc                                       >  1:238009‑M2/39‑143 (MQ=255)
                                                                                                       tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTACTCCAGATCGCCACCCCCCTCGCCg                                      >  1:807081‑M2/38‑143 (MQ=255)
                                                                                                       tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                      >  2:1047086‑M2/38‑143 (MQ=255)
                                                                                                           cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAACCGCTTCGCCGTtcc                                  >  2:243360‑M2/34‑142 (MQ=255)
                                                                                                           cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                  <  1:576746‑M2/110‑1 (MQ=255)
                                                                                                            ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGGCGGTCTCTACGGCAGAGTCTTCACCGTATCCCAGCtcgcaaaccgctggacctgtcac                                 >  1:844854‑M2/33‑132 (MQ=255)
                                                                                                                    cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                         <  2:734021‑M2/119‑1 (MQ=255)
                                                                                                                                   gccgtctgcCGTCCCCTGCACATCAATGAGGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTa          <  2:440902‑M2/134‑1 (MQ=255)
                                                                                                                                    ttacgcacCGACCCCCGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAc         <  2:1062961‑M2/135‑1 (MQ=255)
                                                                                                                                    ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCAATAAAAATACCGACAGAAACAGCGGCTAc         >  2:389566‑M2/9‑143 (MQ=255)
                                                                                                                                      ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa       >  2:859800‑M2/7‑143 (MQ=255)
                                                                                                                                           cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt  <  2:1039588‑M2/142‑1 (MQ=255)
                                                                                                                                           cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt  <  2:1040612‑M2/142‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                             
AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815800‑3816081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: