Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	72 [1]	[0] 70	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	1 (0.020)	68 (1.080)	48/268	0.2	99.3%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979141‑1979419                                                                                                                                           |                                                                                                                                              ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgagcttgtcaataatgcgtgatgcagatcacacaaaacactcaattacttaacctaaatgTATaa                                                                                                                                           >  1:695258‑M2/139‑143 (MQ=255) ctttacacttacctaagatttttcctaaatcgacgcaactgtactcatcaccacacccacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                           <  1:692233‑M2/5‑1 (MQ=255) ctttacacctatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggagctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                           <  1:62106‑M2/5‑1 (MQ=255)   ttacacttatctaagatgtttcctaaatcgacgcaactgtactcgtcactacccgcacatacgacggaggggggctgcgattttcaataatgcgtgatgcagatcccacaaaaccctcaattacttagtatagatgtttgggt                                                                                                                                         >  2:286975‑M2/137‑137 (MQ=255)    tacacttatctaagatttttcctaaatggacggaactgtactcgtgactacacgcacatacagcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                        <  1:193644‑M2/8‑1 (MQ=255)       acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacacaattacttaacataaatgTATAAGTCATa                                                                                                                                     >  1:7203‑M2/133‑143 (MQ=255)             ctaagagttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggccgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑ttttg                                                                                                                              <  2:557836‑M2/17‑1 (MQ=255)              taagatttttcctacatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑ttttgt                                                                                                                             <  1:674063‑M2/18‑1 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATAc‑tcttgc                                                                                                                             >  1:671666‑M2/126‑142 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑ttttgt                                                                                                                             >  2:620255‑M2/126‑143 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑ttttgt                                                                                                                             >  1:875585‑M2/126‑143 (MQ=255)              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaaccgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑gtctgt                                                                                                                             >  1:200177‑M2/126‑143 (MQ=255)               aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑ttttgtt                                                                                                                            >  2:508287‑M2/125‑143 (MQ=255)                  atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacggcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaccactcaattacttaacattattcTATAAGTCAcac‑aattgttaat                                                                                                                         >  2:276137‑M2/122‑140 (MQ=255)                   tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTgg                                                                                                                        >  2:771943‑M2/121‑143 (MQ=255)                    ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTggg                                                                                                                       >  2:472270‑M2/120‑143 (MQ=255)                     tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGgt                                                                                                                      <  2:318862‑M2/25‑1 (MQ=255)                         ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaaatacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTAt                                                                                                                  >  1:1021098‑M2/115‑143 (MQ=255)                           aaatcgacgcgactgtactcgttactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTCGTTTTGGGTGTAttt                                                                                                                <  1:978828‑M2/31‑1 (MQ=255)                           aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTAttt                                                                                                                <  2:983777‑M2/31‑1 (MQ=255)                                         gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                  <  2:133601‑M2/45‑1 (MQ=255)                                         ggactcgtcactacacgcacacacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                  <  2:652874‑M2/45‑1 (MQ=255)                                          tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCTATCTGTTAAAAAg                                                                                                 >  1:622958‑M2/98‑143 (MQ=255)                                          tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAg                                                                                                 >  1:1148701‑M2/98‑143 (MQ=255)                                          tactcgtcactacacgcacatacaacggaggggggctgcgagtttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                 >  2:503920‑M2/98‑143 (MQ=255)                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                              >  1:275245‑M2/95‑143 (MQ=255)                                               gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            >  2:742029‑M2/93‑143 (MQ=255)                                               gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGgtttt                                                                                            >  2:156195‑M2/93‑143 (MQ=255)                                               gtcactacacgcacatacaacggacgggggctgcgattttcaataatgcgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTGTTGGGTGTATTTCACTATCTCACAAAgttgtt                                                                                            >  1:1013164‑M2/93‑143 (MQ=255)                                                tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTTTTTTGGATGTATTTCAATATGTTAAAAAATTTTTc                                                                                           >  1:736033‑M2/92‑143 (MQ=255)                                                tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                           <  1:418108‑M2/52‑1 (MQ=255)                                                 cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAagtttttag                                                                                          >  1:1146177‑M2/91‑141 (MQ=255)                                                   ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTGTAAGTCATAC‑TTTTGTTTTGGGTGTTTTCCAATATAATTAAAAGTTGttcgtt                                                                                        >  1:234528‑M2/89‑141 (MQ=255)                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                       >  1:305557‑M2/88‑143 (MQ=255)                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTGGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                       >  1:1144339‑M2/88‑143 (MQ=255)                                                        ctagcatgcaacggaggggggcttggattttcaataatgcgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                   <  1:327104‑M2/60‑1 (MQ=255)                                                         gcacatacaacggagggggcctgcgaatttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGCTTTGGGTGTATTTCATTCTGTTCAAACGTtcttcgatacacct                                                                                  >  1:151272‑M2/83‑139 (MQ=255)                                                             atacaacggaggggggctgcgattttcaataatgcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATagcaa                                                                              >  1:1012945‑M2/79‑143 (MQ=255)                                                                caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                           >  1:190215‑M2/76‑143 (MQ=255)                                                                caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTAGTTCAAACTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                           >  1:239629‑M2/76‑143 (MQ=255)                                                                    ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTTAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                       <  2:554259‑M2/72‑1 (MQ=255)                                                                               gcgattttcaataatacgtgatgcagctcacacaaaacatgcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTGTGGGTGAATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                                                            <  1:1030299‑M2/83‑1 (MQ=255)                                                                                cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAACCAGGaat                                                           <  1:472044‑M2/84‑1 (MQ=255)                                                                                     ttcaataatgcgtgatgcatatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                      <  2:1065817‑M2/89‑1 (MQ=255)                                                                                     ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAggaataattg                                                      >  1:1090481‑M2/55‑141 (MQ=255)                                                                                       caataatgcggtctgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATAC‑TTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                    <  1:13435‑M2/91‑1 (MQ=255)                                                                                        aataatgcgtgatgcagatcacacaaaacactccattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTAGCTACGCTAGCACGCAAAAATGAaacaagaataaacaaca                                                   >  1:808775‑M2/52‑137 (MQ=255)                                                                                        aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGACTAATCGaaa                                                   >  1:677339‑M2/52‑143 (MQ=255)                                                                                        aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                   >  2:948452‑M2/52‑143 (MQ=255)                                                                                        aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                   >  2:1105591‑M2/52‑143 (MQ=255)                                                                                            ttgtgtgatctgcatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAGTggg                                               >  2:556330‑M2/48‑143 (MQ=255)                                                                                              gcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                             >  1:784262‑M2/46‑143 (MQ=255)                                                                                              gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                              >  1:865398‑M2/46‑143 (MQ=255)                                                                                                   aggtagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                        <  1:276137‑M2/103‑1 (MQ=255)                                                                                                    tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                       <  2:856505‑M2/104‑1 (MQ=255)                                                                                                         atcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                  <  2:7203‑M2/109‑1 (MQ=255)                                                                                                          tcacacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                 >  2:684289‑M2/34‑143 (MQ=255)                                                                                                            acacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGATTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                               >  1:254976‑M2/32‑143 (MQ=255)                                                                                                             cacaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaa                              >  2:303236‑M2/31‑143 (MQ=255)                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCTAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                             >  2:531900‑M2/30‑143 (MQ=255)                                                                                                                aaaacactcaatgacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                           <  2:200177‑M2/116‑1 (MQ=255)                                                                                                                  aacactcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAACAAGTTTTTCGCTACGCTAGCAAGCAACAATGAAACAGGAATAATCGAAACGCCACGTTGCACACAGCCCAAATaa                         >  1:1145013‑M2/26‑143 (MQ=255)                                                                                                                       tcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAGAGAGGATGTTGCGCACAGTCAAAATAACTCAc                    >  2:897618‑M2/21‑143 (MQ=255)                                                                                                                       tcaattacttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTACGCACAGTCaaactaaattag                    >  1:394328‑M2/21‑138 (MQ=255)                                                                                                                             acttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa              <  2:275245‑M2/129‑1 (MQ=255)                                                                                                                             acttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa              <  2:875585‑M2/129‑1 (MQ=255)                                                                                                                               ttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGGTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata            >  2:343958‑M2/13‑143 (MQ=255)                                                                                                                               ttaacataaatgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCCCCGTAaata            >  2:1105246‑M2/13‑143 (MQ=255)                                                                                                                                      agatgTATAAGTCATAC‑TTTTGTGTTGGGTGTATTTCAATCTGTTAAAAATTCTTTCGCTACGCTAGCAAGCAAAAATAAAACATGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt     <  1:230008‑M2/138‑1 (MQ=255)                                                                                                                                         tgTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt  <  2:1054139‑M2/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATAC‑TTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979141‑1979419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑