| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3220235 = | 102 (0.790) | 5 (0.040) | 5/408 | NT | 4.1% | coding (744/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | 3220407 = | 139 (1.130) | coding (916/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
GGTATGCAGGAATGGGTTGTCGAACAGAACTGAAAACACCTCTTCAGTGGCGATGGTCGCGCCAATCGGCATCACGCCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3220481‑3220235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcggcGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAA > NC_000913/3220407‑3220640 GGTATGCAGGAATGGGTTGTCGAACAGAACTGAAAACACCTCTTCAGTGGCGATGGTCGCGCCAATCGGCATCACGCCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCG > 2:650832/1‑239 TGCAGGAATGGGTTGTCGAACAGAACTGAAAACACCTCTTCAGTGGCGATGGTCGCGCCAATCGGCATCACGCCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGG < 1:1275833/239‑1 catAACTGAAAACACCTCTTCAGTGGCGATGGTCGCGCCAATCGGCATCACGCCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGCGTGATGCCGATTGGCG < 1:921361/236‑1 CCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGGGATAGCCCGGCGGCGGCGGTGTGCCGATTGGCGCGACCGTCGCCCCCGCACAGGGGTTTTCAGGTTTGTTtggcccccccttcc > 2:36993/1‑224 GATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCG > 2:481155/1‑238 GGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTG < 1:481155/239‑1 CCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCT < 1:36993/239‑1 CGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGGGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCCAAAAGGCGCTATGTTTCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCGCGATCTGGTAC > 2:230570/1‑239 ggGGCGGGATGCCGATTGGAGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCAGTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGA < 2:578849/236‑1 CGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAAATGGCGCGGGAATATCCCGATCTGGTACAGGAA > 1:1382955/1‑238 GGTATGCAGGAATGGGTTGTCGAACAGAACTGAAAACACCTCTTCAGTGGCGATGGTCGCGCCAATCGGCATCACGCCGCCGCCGAGCGCTTTGGCAAGGCAGAGGATATCCGGCTGTACGTTCTCATGCTCGCAGGCGAACATCTTGCCCGTGCGCCCCATGCCCGTTTGTACTTCATCGAGGATCATCAGTGCGCCGAACTCATCGCATAGCTTACGTACGGCGGTGAGATAGCCCGGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3220481‑3220235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcggcGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAA > NC_000913/3220407‑3220640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |