| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2647583 = | 40 (0.790) | 4 (0.080) | 4/270 | 6.9 | 9.3% | coding (4703/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| ? | NC_000913 | 2647603 = | 40 (0.820) | coding (4683/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGCTCTTACCATCAG > NC_000913/2647465‑2647745 | gTATTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCt > 2:307153/1‑143 (MQ=255) tATTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTCCGCCAGACTcag > 1:746292/1‑141 (MQ=255) tATTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTATGCTCCAGGCTGGCGCTACCGTGCGCCAGagtact > 2:113385/1‑138 (MQ=255) aTTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCggg > 2:544006/1‑143 (MQ=255) gtcatccACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGt < 1:612390/142‑1 (MQ=255) tcatgaACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCGCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGtt < 2:175388/143‑1 (MQ=255) tcatcaACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGtt > 2:152645/1‑143 (MQ=255) gcaACGGCAACCGCCGCGCGCAAGCGGTCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGTGCTACCGTTCGCCAGATTCTGGTTttc < 1:71380/142‑1 (MQ=255) aaCGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTACTGCACTTCGCCACCACTTTGCTCCAGGCCGGCGCTACCGTTCGCCAGATTCTGGTTttcca > 2:449533/1‑143 (MQ=255) catccgcggCCACAAAGCGATCGTCACGGACCTGAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTttccagttcc < 1:163079/140‑1 (MQ=255) cAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTttccagttcc < 2:621752/143‑1 (MQ=255) ccgccgCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGCTCCAGa < 2:85707/143‑1 (MQ=255) tgtgccACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGACGCCACGTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCCGTTCCAGAcc > 1:310106/4‑143 (MQ=255) ccaccACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGAccc < 2:545466/140‑1 (MQ=255) aaGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCgcaggcag < 1:307225/143‑1 (MQ=255) aGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGgcagc > 1:133004/1‑143 (MQ=255) aTCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGAt > 2:763488/1‑143 (MQ=255) tcgtcgCGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCAATGTGTATCCTGTTTGCTCCAGGCTGGCGCGATCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATc < 2:885426/143‑1 (MQ=255) tCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGCTCCAGACCCGCAGGCAGCAGATc > 1:4652/1‑143 (MQ=255) aCGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCCGGCAGCAGATCTAcca > 2:640139/1‑141 (MQ=255) cGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGAc > 2:598126/1‑143 (MQ=255) cGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGAc > 2:595701/1‑143 (MQ=255) tcTCGATGGGCTTGATGCTCGCTTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTGTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAAc < 1:375208/142‑1 (MQ=255) ttAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCAc > 2:220282/1‑143 (MQ=255) ttAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTGCCATGTCCAGACCCGCAGGCACACGATCTTCGATTAACGcccacgacgc > 2:832927/1‑134 (MQ=255) aaTGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTGTGCTCCAGGCTGGCGCTCCCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGGCCAACGGATCCGGCCCga > 1:302966/1‑142 (MQ=255) tGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACGTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTGTTCCAGTTCCAGACTCGAAGGCAGCAGATCGACGAGCAACGccccggccacgcgg > 1:883994/1‑130 (MQ=255) tCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTa > 1:869495/1‑143 (MQ=255) ccTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGttccgg > 1:837044/1‑139 (MQ=255) tAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACcaca > 1:278784/1‑143 (MQ=255) tAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTCGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACcaca > 2:574943/1‑143 (MQ=255) cACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCAcaccagcacca > 2:862706/1‑143 (MQ=255) cacTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTa < 2:371479/143‑1 (MQ=255) cacTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCCGTTACTGGCTTTTACCTGCAACCACACCCGCACCAGACCGCCGCTa > 1:664175/1‑143 (MQ=255) tttGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGATAAGGGCTTTTACCTGCAAACACACCAGCACCATATCGCCGCTACGt > 2:553133/1‑143 (MQ=255) cAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGGTACACGACGAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGAACGCCGCTCCGTAACGAGt > 2:778583/1‑143 (MQ=255) cAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTCCGTACCGAGt > 1:451120/1‑143 (MQ=255) cTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAg < 2:67431/143‑1 (MQ=255) gcTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCCGCACCAGATCGCCGCTCCGTAACGAGTCCCGCGCtt > 2:206253/1‑143 (MQ=255) cGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGcgc > 2:231446/1‑141 (MQ=255) ccAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCCCGCTGTTGCTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGATCTTAccc > 2:529249/1‑142 (MQ=255) cAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGCTCTTACCAt < 2:133004/143‑1 (MQ=255) aGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGCTCTTACCATc < 1:152645/143‑1 (MQ=255) aGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGGTACTGGCTTTTACCTGCAACCACACCAGCACCAGACCGCCGCTACGTAACGAGTCCAGCTACTTGCTCTTACCCTc > 1:414235/1‑143 (MQ=255) aTTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCCGATCGCCGCTACGTAACGAGTCCAGCGATTTGCTCTTACCATCAg < 2:36847/143‑1 (MQ=255) | GTATTCATCAACGGCAACCGCCGCCACAAAGCGATCGTCACGGAACTCAATGTGCTTAATGCTCGCCTGCTGCATCTGGTTCAGTAAGTTCTGCACTTCGCCACCACTTTGCTCCAGGCTGGCGCTACCGTTCGCCAGATTCTGGTTTTCCAGTTCCAGACCCGCAGGCAGCAGATCCACGACTAACGCATCCGGCACGCTGTTACTGGCTTTTACCTGCAACCACACCAGCACCAGATCGCCGCTACGTAACGAGTCCAGCGATTTGCTCTTACCATCAG > NC_000913/2647465‑2647745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |