New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4049906	0 (0.000)	108 (2.130)	76/282	0.0	100%	noncoding (9/109 nt)	spf	Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
	?	NC_000913	= 4499512	NA (NA)					intergenic (+11/+82)	insD1/yjgX	IS2 transposase TnpB/pseudogene fragment

GGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCT  >  NC_000913/4499381‑4499653                                                                                                                                    |                                                                                                                                              ggCGTGCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGa                                                                                                                                    <  1:511249/143‑1 (MQ=38)  gCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCGGat                                                                                                                                   >  2:798609/1‑143 (MQ=25)    gTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATAGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGCGTGAAGTGATACCAGATGTCTGGAAATCTAGGGGCAAATCCACATTGTGCTGatat                                                                                                                                 >  2:360067/1‑143 (MQ=11)        gAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCCAGTCCACCTTGTGCTTACATGaag                                                                                                                             >  2:849540/1‑142 (MQ=11)          gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTCAGAGCAGACGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATAc                                                                                                                           >  2:201649/1‑143 (MQ=255)              tataACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGat                                                                                                                       >  2:106032/1‑143 (MQ=255)                taACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGatat                                                                                                                     <  2:428045/143‑1 (MQ=255)                    gAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTta                                                                                                                 >  2:679281/1‑143 (MQ=255)                          cATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCCGCGGGCTTGTACTGCGTGCAGTGATAACAGATGTCTGGACATATAGGAGCATATCCACCTACTGAGCAGAGGAATCCGGATACTGTACACAGa                                                                                                           >  1:306186/1‑143 (MQ=2)                          cATCCGCATAGTGCGCTGGGTTATCGCTCACCACGGGAATATCTGCGGCATCGAGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATTGTGCTGATATCAAAACGGATATTTTATAAAGa                                                                                                           >  1:286723/1‑143 (MQ=17)                           aTCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAAAGGGTTAACGGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGaa                                                                                                          >  2:558328/1‑143 (MQ=255)                                    ggggggtGGGGTATCCATCGCTGCGGTAATATCTGCGGCAGCGGGCTTGTAATGGGTGAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCa                                                                                                 <  1:575893/137‑1 (MQ=21)                                    ctGCGCTGCGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCa                                                                                                 <  2:321285/142‑1 (MQ=255)                                     tGCGCTGGGTTATCGCTCGCCACAGGAATAACTGGGGCATCGGGCTTGTAATGGGTTAAGTGATGACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTGATACAGGCTACTTGTCAg                                                                                                >  2:610522/1‑143 (MQ=18)                                       cgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTa                                                                                              <  2:741781/143‑1 (MQ=255)                                            ggTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGAAGAGCCACCAGGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGc                                                                                         >  2:409187/1‑143 (MQ=21)                                                 tcgctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTg                                                                                    >  2:300725/1‑143 (MQ=255)                                                         cACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAg                                                                            >  1:539029/1‑143 (MQ=255)                                                            gggAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCt                                                                         >  2:761320/1‑143 (MQ=255)                                                                     tGCGGCAGCGGGCTTGTAATGGGTTAAGTGATCCTCGCTGTCTGGAGATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCatatat                                                                <  1:625088/143‑1 (MQ=38)                                                                     accGGCCGCCGTCTTGTAATGGCTTCAGTGCTATCCGATGTGTGGAACTATAGGGGCACCTAATTCTTGTGCTGATCTGAATACGAATAGTTCAGTCCGTATTATTTTCTGTCCAAGCGCCTGTATTACAGTCTGCCatatat                                                                <  1:824977/141‑1 (MQ=255)                                                                             cGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCt                                                        <  2:217419/143‑1 (MQ=255)                                                                             cGGGCTTGCAATGGGTTAAGTGAGAACAGATGGCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATCCGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCt                                                        <  2:226734/143‑1 (MQ=255)                                                                                gCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGTATCCGCACATGTAAGACAGAATCCTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCtgtg                                                     >  2:411970/1‑143 (MQ=25)                                                                                gCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCtgtt                                                     >  2:809674/1‑142 (MQ=255)                                                                                gCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCtgtg                                                     >  2:550595/1‑143 (MQ=255)                                                                                  ttGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGAt                                                   >  2:68549/1‑143 (MQ=255)                                                                                     tAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAg                                                >  2:167006/1‑143 (MQ=255)                                                                                       aTGGGTTACGTGATAACAGATGTCCGGAAAGATAGTGGCAAATCCACCTTGTGCTGATATGAGTACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGga                                              <  1:14390/143‑1 (MQ=255)                                                                                       aTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGga                                              <  2:831388/143‑1 (MQ=255)                                                                                        tGGGTTAAGTGTTAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGgaa                                             <  1:281248/143‑1 (MQ=255)                                                                                          ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGgaaga                                           >  2:616965/1‑143 (MQ=255)                                                                                          ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTATATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATGAGgaaga                                           >  1:104809/1‑143 (MQ=255)                                                                                           gTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATGTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGgaagaa                                          >  2:126205/1‑143 (MQ=255)                                                                                                 tGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTg                                    >  1:286949/1‑143 (MQ=255)                                                                                                    tAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCAGATATGATTACCCGTGATCAGGCAGAATAAGTGGCt                                 >  2:304154/1‑143 (MQ=255)                                                                                                       cAGCTGTCCAGAAATTGAGTGGCAAATCCACCTTGTGCTGATATGGATACGGATATTTTATACAGAATCCTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAg                              <  1:257206/143‑1 (MQ=255)                                                                                                          aTGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTCCAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGACGAATAAGCGGCGGAggct                           >  1:75588/1‑141 (MQ=255)                                                                                                           tGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAAGAAGTGGCAGAGGtgt                          >  1:301919/1‑141 (MQ=255)                                                                                                             tCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCa                        >  1:73798/1‑143 (MQ=255)                                                                                                              cTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGGCACAAACAATTATTTGTGGCAAGTAAAAAAAAGTGGCTGAGGTTTCaa                       >  2:791302/1‑143 (MQ=255)                                                                                                               gggAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCaaa                      <  1:405478/142‑1 (MQ=255)                                                                                                                 gAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACt                    >  2:350765/1‑143 (MQ=255)                                                                                                                   aaTATAGGGGCAAAACCACCTTGTGGTGATATGAAGACGTGTATTTTATACAGAAGACTTTTCAGTACAAGCGACGGTATTACAGTCTGCCGTATATGATTAACTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGt                  <  1:551222/143‑1 (MQ=255)                                                                                                                     tataGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCt                >  2:105187/1‑143 (MQ=255)                                                                                                                      ataGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTg               >  2:584407/1‑143 (MQ=255)                                                                                                                      ataGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTg               >  1:265472/1‑143 (MQ=255)                                                                                                                       taGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGGATGACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGc              <  2:66201/143‑1 (MQ=255)                                                                                                                                   cACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCct  <  1:201649/143‑1 (MQ=255)                                                                                                                                   cACCTTGTACTGCTATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCct  <  2:599100/143‑1 (MQ=255)                                                                                                                                    |                                                                                                                                              GGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCT  >  NC_000913/4499381‑4499653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.