Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 4,001,644 Δ5 bp coding (220‑224/951 nt) corA → magnesium/nickel/cobalt transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40016431 (0.020)49 (0.840) 41/284 0.4 98.0% coding (219/951 nt) corA magnesium/nickel/cobalt transporter
?NC_000913 4001649 = 1 (0.020)coding (225/951 nt) corA magnesium/nickel/cobalt transporter

AGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCC  >  NC_000913/4001502‑4001782
                                                                                                                                             |                                                                                                                                           
aGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGAGATCGACGCATCGGCCCGTTTCTTTGAAGACGACGCCGGCCTGCATc                                                                                                                                            >  2:843940‑M1/1‑142 (MQ=255)
aGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACGGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGGCGACGACGGCCTGCATc                                                                                                                                            >  2:362314‑M1/1‑142 (MQ=255)
    tGGATTGATCTTGGCGAACCGGACGACGACCAGCGACTGCGCGTACAAGCTGAACTGGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcct                                                                                                                                        <  2:376610‑M1/143‑6 (MQ=255)
      ggttgaTCGTGCCGAACCGGACGACTACGAGCGACGGCGCGTACAGTCTGAACTTGGCCAGAGCCTGGCTTTCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttc                                                                                                                                      <  2:517725‑M1/141‑8 (MQ=255)
             cTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttct                                                                                                                               <  1:417062‑M1/143‑15 (MQ=255)
                 tCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttga                                                                                                                           <  2:492014‑M1/143‑19 (MQ=255)
                     aCCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagat                                                                                                                       >  2:939095‑M1/1‑121 (MQ=255)
                         gacgacgacGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTGTGCAGACGACGACGGCCTGCATctgattcgtcgtctttggagacgcgg                                                                                                                   >  1:158209‑M1/1‑117 (MQ=255)
                           caccgacgaGGTACTGCGCCTACAAGCTGAACCTGGCCGGAGCCGGGCATGCCGCCCGGAACTGGAAGACATCGGAGGATCGGCACGTTTCTTCGAAGACGCCGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCTGaa                                                                                                            <  1:887298/140‑1 (MQ=255)
                            cgcgacgggcGACTGCGCCTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGCAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaag                                                                                                                <  1:398542‑M1/141‑30 (MQ=255)
                               gacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttggagatgcggacgctc                                                                                                             >  2:595345‑M1/1‑111 (MQ=255)
                                   aGCGACTGCGCGTACAATCTGAACTGGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgc                                                                                                         <  2:495756‑M1/143‑37 (MQ=255)
                                    gCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgcc                                                                                                        <  2:695324‑M1/143‑38 (MQ=255)
                                    gCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagaggcgggagatcacgcc                                                                                                        >  2:768736‑M1/1‑106 (MQ=255)
                                        cTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccgcga                                                                                                    >  2:727386‑M1/1‑102 (MQ=255)
                                         tGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaa                                                                                                   >  2:807247‑M1/1‑101 (MQ=255)
                                         tGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaa                                                                                                   >  2:1015653‑M1/1‑101 (MQ=255)
                                           cgcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaact                                                                                                 <  1:694521‑M1/143‑45 (MQ=255)
                                            gcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATAGCAGCATCGGCACGGGTCTTTGGAGACGACGACGGCCGGCATctccttcttcttctttgaagatgcggaagagctcgccgggaactc                                                                                                >  2:49940‑M1/1‑98 (MQ=255)
                                              gTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGAGGACGACGGCCTGCATctccttcttcttctttgaagctgcggaagatcacgccggtaactcca                                                                                              >  2:508066‑M1/1‑96 (MQ=255)
                                                    tCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgacgatgcggaagatcacgccggtaactccactgtgg                                                                                        >  2:919780‑M1/1‑90 (MQ=255)
                                                      tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca                                                                                      <  1:908132‑M1/143‑56 (MQ=255)
                                                      tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca                                                                                      >  2:495573‑M1/1‑88 (MQ=255)
                                                        aaCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatt                                                                                    <  2:454770‑M1/143‑58 (MQ=255)
                                                          cTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattta                                                                                  <  2:247386‑M1/143‑60 (MQ=255)
                                                           ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccgtcttcttctttgaagatgcgggagatgacgccggtaactccactttggcatctac                                                                                 >  2:262865‑M1/1‑83 (MQ=255)
                                                                           aaCCGGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACTACGACGGCCTGCACctcttaatacttctttgaagatgcggaagatcacgccggtaactccactgttgcatttaccatccgtgatggtcgt                                                                 <  1:254182‑M1/143‑77 (MQ=255)
                                                                              ccgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctg                                                              >  1:787177‑M1/1‑64 (MQ=255)
                                                                                  ccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgttta                                                          >  1:304766‑M1/1‑60 (MQ=255)
                                                                                   cgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaacgccactgtggcgtttactgtccgagatgcccaactgattac                                                         >  2:344729‑M1/1‑59 (MQ=255)
                                                                                          ggAAGACATCGAAGCCTCGGCACGTTTCCTTGCAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtcgcatttaccctccgtgatggtcgtctgtttactctgcgt                                                  <  2:238486‑M1/143‑92 (MQ=255)
                                                                                           gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtg                                                 >  2:541048‑M1/1‑51 (MQ=255)
                                                                                           gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatcagtgatggtcgtctgtttactctgcgtg                                                 >  2:49092‑M1/1‑51 (MQ=255)
                                                                                            aaGACATCGAAGCATCGTCACGTTTCTTTGAAGACCACGACGGCCTGCATctcctccctctcctgtgaaaatgcaaaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga                                                <  2:231550‑M1/143‑94 (MQ=255)
                                                                                            aaGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga                                                <  2:304766‑M1/143‑94 (MQ=255)
                                                                                                   cGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                         <  2:688862‑M1/143‑101 (MQ=255)
                                                                                                   cGAAGCATCGGCACGTTTCGTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                         <  1:1015653‑M1/143‑101 (MQ=255)
                                                                                                         attggcacGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagaccacgccggtaactccactgcggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgccc                                   >  2:908397‑M1/4‑37 (MQ=255)
                                                                                                             gCACGTTTCTTGGAAGACGTGGCCGGCCTGCATctccttcgtcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctt                               <  1:76473‑M1/143‑111 (MQ=255)
                                                                                                                  tttCTTTGAAGACGACGGCGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgt                          <  1:299686‑M1/143‑116 (MQ=255)
                                                                                                                  tttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcaagccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttcctgtgggttggggtggactgcccgcttttagt                          >  2:420244‑M1/1‑28 (MQ=255)
                                                                                                                    tCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactgcactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtct                        <  1:867417‑M1/143‑118 (MQ=255)
                                                                                                                    tCTTTGAAGACGACGACGGCCTGCATctccttctgcttctttgaagatgcggaagatcacgccggtaactcgactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtct                        <  1:200070‑M1/143‑118 (MQ=255)
                                                                                                                     cTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaagtcaactgtggcatttaacatccgtgatggtcgtcggtttactctgcgtgagcgtggactgccgtcttttcggctg                       >  2:297591‑M1/1‑25 (MQ=255)
                                                                                                                        tGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtat                    >  2:838003‑M1/1‑22 (MQ=255)
                                                                                                                         gcagaCGACGACGGCCTGCATctccgtcttcgtctttgaagatgcggaagagcacgccggtaactccactgtggcagttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatc                   <  2:918813‑M1/141‑123 (MQ=255)
                                                                                                                           aGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttgtcgtctgtatcgt                 >  2:108220‑M1/1‑19 (MQ=255)
                                                                                                                            gacgacgacGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta                >  1:695487‑M1/1‑18 (MQ=255)
                                                                                                                                  gacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtg          <  2:787177‑M1/143‑132 (MQ=255)
                                                                                                                                          gCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttctcggctgtatcgtctgcgtgcccgtagc  >  2:5794‑M1/1‑4 (MQ=255)
                                                                                                                                             |                                                                                                                                           
AGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCC  >  NC_000913/4001502‑4001782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.