| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2766335 | 206 (1.310) | 3 (0.020) | 3/416 | NT | 1.4% | coding (420/1074 nt) | rnlA | CP4‑57 prophage, RNase LS |
| ? | NC_000913 | = 2766339 | 209 (1.370) | coding (424/1074 nt) | rnlA | CP4‑57 prophage, RNase LS | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2766093‑2766335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggaaaTAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTCCCCGT < NC_000913/2766339‑2766103 ATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTG < 1:841874/239‑1 TTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGA < 2:1405726/239‑1 CACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACACTACGGTATGAGCGTTACGAGAGTG > 1:438332/1‑239 GGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGAT < 2:438332/237‑1 gCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCT < 1:1422275/237‑1 TGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAA < 1:114489/154‑1 TGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAA > 2:114489/1‑154 TGGAAATAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTC > 1:1543309/1‑238 TGGAAATAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTC > 2:428479/1‑238 GAAATAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCACAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGCATTGTAGTCGAACCGTCCCC > 2:679177/1‑239 AATAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTCCCCGT < 2:76559/239‑1 AATAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTCCCCG < 1:201492/238‑1 ATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2766093‑2766335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggaaaTAATTTTCCACACTACGGTATGAGCGTTACGAGAGTGTTCTCTGAACTCTATATGCGATTCATCTGCTGATAGCTCAAGTACAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGTTTCAAAAAGATGATCCGCTAACTCTTGGCCCAGAGAACGATTGGCTCCAGTGAGATATTGAATTGTAGTCGAACCGTCCCCGT < NC_000913/2766339‑2766103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |