New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2514275 =NA (NA)50 (0.800) 42/278 0.4 86.5% intergenic (+33/‑54) nupC/insL1 nucleoside (except guanosine) transporter/IS186 transposase
?NC_000913 = 2536318 8 (0.130)coding (487/510 nt) crr glucose‑specific enzyme IIA component of PTS

CCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2514416‑2514275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTCAATGACAGTATCGCC  <  NC_000913/2536318‑2536180
                                                                                                                                                                                                                                                                                         
CCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGATTACCAATATGGGCCAGAATTGCTGGCCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG                                                                                                                                            >  2:337312/1‑143
CCCCGGCATGACGTGCCGAAGGACCCAGTTCTTCGGGCTTACCAATCTGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGAACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG                                                                                                                                            <  1:874225/143‑1
 ttcggcacgtaaTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG                                                                                                                                           >  1:914645/13‑143
 gCCGGCATTATGTGCGGAGGTATCCAGTGCTACGGGCGTACCAATAGGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGG                                                                                                                                           <  1:91901/142‑1
 CCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTACATCATATCAGGCGTAATACCACAACCCTTAAGTTCGCTCTTATGG                                                                                                                                           >  2:1023347/1‑143
    GGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTT                                                                                                                                        <  1:48387/143‑1
     gccTTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGGGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTT                                                                                                                                       <  2:601856/140‑1
                CGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGCCCAGTTATCGTGGGAGTAATTCGTCGGCACGTTAAATCATATCAGGCGCAATCCCACAACCCTTCAGTTGCCGCTGCTGGGTTCCATCCgctcgt                                                                                                                            >  1:433337/1‑137
                CGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTACTTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGGTAGCGCGTATGGGTTTCACACACGGat                                                                                                                            >  1:384989/1‑141
                  AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGCATTGCTGACCAGTTATCGTGAGAGTAATTCATCGACAAGTTAAATCATATCAGGCGTAATACAACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTAC                                                                                                                          >  1:653667/1‑143
                        CCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACC                                                                                                                    <  2:952426/143‑1
                                gcgtGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTT                                                                                                            <  2:1114342/139‑1
                                 CGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGCCAGTTT                                                                                                           <  2:193797/143‑1
                                 CGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTCATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACGGTTT                                                                                                           <  1:787476/143‑1
                                    GCTGACCAATAGGGGCCAGAATTGCTGACCAGATATCGGGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTAAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGAT                                                                                                        <  2:403402/143‑1
                                     CTTACCAATATGGGCCAGGATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTGAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATC                                                                                                       <  2:369773/143‑1
                                      TTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACGGTTGGAGCA                                                                                                      >  1:769186/1‑143
                                      TTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCA                                                                                                      >  1:821539/1‑143
                                             TATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAGTCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTT                                                                                               <  2:576206/143‑1
                                              ATGGGCCAGAATTGGTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTG                                                                                              <  2:110406/143‑1
                                                   CCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAACCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCCCGGTTACGCTACCGGACCGTTTGATCAGTTCTTTGGTTTC                                                                                         >  1:790322/1‑143
                                                     AGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATGCCACCACCCTTAAGTTAGCGCTTATGGGTTTCACACACGGTTACGCTACCGGACAGTTTGATCAGTTCTCTGATTTCGT                                                                                       >  2:184397/1‑143
                                                      GAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTC                                                                                      <  1:500867/143‑1
                                                      GAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTC                                                                                      <  1:497958/143‑1
                                                       AATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATTCACCCACGGGTACGCTACCGGAAAGTTTGACGAGTGCTTTGATTTCGctc                                                                                     >  1:197719/1‑140
                                                             TGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTCCCGGACAGTTTGATGAGTTCTTTGATGTCGTCCATGTTG                                                                               >  1:67229/1‑143
                                                                CCAGTTATCGTGAGGGTAATTCATCGGTACGTTAAAGCCTATCAGGCGCTCTACCACATCCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGGTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAG                                                                            <  2:363264/143‑1
                                                                   GTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGCCGTAATACCACAACCCTTAAGTTAGCGCTTCTGGGTTTCACCCACGGTTACGCTACCGGCCAGTTTGATCAGTTCTTCGATTTCGTCCATGTTGCAGATA                                                                         >  1:1017060/1‑143
                                                                       TCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAA                                                                     <  2:758596/143‑1
                                                                        CGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAAC                                                                    <  2:907677/143‑1
                                                                          TGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACACACGGTTACGCTACTGGACAGTTTGATCAGTTCTATGATTTCGTCAATGTTGGGGGTAACAACCt                                                                  >  2:1050966/1‑142
                                                                            agtGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTGAGTTAGCGCTTATGGGTTTTACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGA                                                                <  2:843120/140‑1
                                                                            AGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGA                                                                <  1:337312/143‑1
                                                                             GAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCATATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGAGAACAACCGGAG                                                               >  1:379875/1‑143
                                                                                  ATTCATCGGCACGTTAAATCATATCAGGAGTAATACCACAACCGTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGG                                                          <  2:1040807/143‑1
                                                                                         GGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAATTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACT                                                   <  2:980357/143‑1
                                                                                                 gAATCATATCAGGGCTAATACCACCACCCTTAAGTTAGCTCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTC                                           <  2:465667/142‑1
                                                                                                    TCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCT                                        <  1:724592/143‑1
                                                                                                      atatcgctCGTAATCCCACCCCCCTTACGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTCCTTTCATTTCGTCCATGTTGGTGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTC                                      <  1:1059643/135‑1
                                                                                                        ATCAGGCGTAATACCACAACCCTTCACTTCGGATTTAGGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCA                                    <  1:1050329/143‑1
                                                                                                         TCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGCTCAGTTCTTTGATTTCGTCCATGTTGGAGATACCAACCGGCGTCAGGGTAGACTTGGCTTTCTCTTCCAG                                   >  2:529052/1‑143
                                                                                                               GTAATACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCGGGGTAGACTTGCCTTTCTCTTTCAACAGCcg                             >  1:927469/1‑141
                                                                                                                   tgccccaagcgTTAAGTGAGCGCTTAGGGGCTTCACCCACGGTTACGCTACCGGACAGTTTGGTCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGA                         <  2:610539/132‑1
                                                                                                                    ACCACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGAT                        >  1:951531/1‑143
                                                                                                                     cttCAATCCTTAAGTTAGTGCTTATGGGTTTAACTCACGGTTACGCTAGCGGAAAGGTGGAACAGGTCTTGGAGTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATC                       <  1:185896/140‑1
                                                                                                                     CCACAGCCCTTAAGGTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATC                       <  1:952284/143‑1
                                                                                                                       ACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGCTCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAA                     >  1:893947/1‑143
                                                                                                                       ACAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGCGCCAGGGTAGACCTGGCCTTCTCTTCCCGCCCCGGCcgcgcca                     >  2:1060845/1‑136
                                                                                                                        CAACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACCTAGCTTTCTCTTCCAGCAGCGGCAGATacaa                    >  2:619791/1‑139
                                                                                                                         AACCCTTAAGTTAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCGTTCTCTTCCAGCAGCGGAAGAGCAAAT                   >  1:899435/1‑143
                                                                                                                           CCCTTAAGTGAGCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTC                 <  2:765761/143‑1
                                                                                                                                AAGTTAGCGCTCATGGGCTGCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCCTCCATGTTGGCGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTCAATGA            <  1:303201/143‑1
                                                                                                                                  gtgAGCGCTTATGCGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTCAATGACA          <  1:224912/140‑1
                                                                                                                                      GCGCTTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTCAATGACAGTAg      >  2:298838/1‑142
                                                                                                                                          TTATGGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCGGCAGCGGCAGATCAAATTCAATGACAGTATCGCC  >  1:366559/1‑143
                                                                                                                                                                                                                                                                                         
CCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATggg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2514416‑2514275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGTTTCACCCACGGTTACGCTACCGGACAGTTTGATCAGTTCTTTGATTTCGTCCATGTTGGAGATAACAACCGGAGTCAGGGTAGACTTGGCTTTCTCTTCCAGCAGCGGCAGATCAAATTCAATGACAGTATCGCC  <  NC_000913/2536318‑2536180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.