Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,977,560	Δ33 bp	coding (964‑996/1032 nt)	galR →	galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2977560	2977592	33	60 [1]	[0] 59	galR	galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2977559	1 (0.020)	53 (0.860)	47/276	0.2	99.1%	coding (963/1032 nt)	galR	galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor
	?	NC_000913	2977593 =	0 (0.000)					coding (997/1032 nt)	galR	galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor

ACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGG  >  NC_000913/2977452‑2977734                                                                                                                                              |                                                                                                                                              gtgctggtgtcacgctatgtgcgtccgcgcctgaccaccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTc                                                                                                                                              >  2:969192‑M2/142‑143 (MQ=255)       gtgtcacgctatgtgcgtccgcgcctgcccgccgtgcgtcacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGa                                                                                                                                        <  2:754213‑M2/8‑1 (MQ=255)        tgtgacgctatgggcgtccgcgcctgaccaccgtgcgtcacccgatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctcgcccggaaatcactaatgtctttagtccgTCGCTGGAg                                                                                                                                       <  2:177640‑M2/9‑1 (MQ=255)                  tgtgcgttcgcgtctgaccaccgtgcgttagccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGtcatc                                                                                                                             <  1:1048973‑M2/19‑1 (MQ=255)                    tgcgtccgcgcctgaccaccgtgcgttacccaatcgtgacgatggcgaccacggctgcctaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTcatcat                                                                                                                           <  1:932178‑M2/21‑1 (MQ=255)                     gcgtccgcgcctgaccagcgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggttttggctgataatcgccttcttccggaaatcactaatgtctttagtccgGCGCTGGAGGCAAGTCATCATg                                                                                                                          <  1:483323‑M2/22‑1 (MQ=255)                      cgtccgcgcctgaccaccgtgcgttacccaatcgtgacgatggcgacccaggctcccgaactgtctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGCGGCAAGTCATCATGc                                                                                                                         >  1:416957‑M2/121‑143 (MQ=255)                          cgcgcctgaccaccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactcatgtcgttagtccgTCCCCGGAGGCAAGTCAACATgcaaac                                                                                                                     >  2:336133‑M2/117‑141 (MQ=255)                           gcgcctgaccaccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCa                                                                                                                    >  1:423953‑M2/116‑143 (MQ=255)                             gcctgaccaccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctgccggaaatcactaatgtctttagtccgTCGCTGGAGGCAGGGCCTCCTGCCACCAGc                                                                                                                  >  1:723600‑M2/114‑143 (MQ=255)                               ctgacccccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGa                                                                                                                <  1:189812‑M2/32‑1 (MQ=255)                                 gaccaccgtgcgttacccaatcgtgacgatggcgacccaggccgccgaactggctttggcgctggcggataatcgacctctcccggaaataactaatgtctttagtccgTCGATAGAGGCAGAGCATCATGCAACAAACGACt                                                                                                              >  2:275339‑M2/110‑143 (MQ=255)                                    caccgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAc                                                                                                           >  1:225783‑M2/107‑143 (MQ=255)                                       cgtgcgttacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcaccaatgtctttagtccgTCGCTGGCGGCACGTCACCATGCCACCAGCCACCaacccc                                                                                                        >  1:467761‑M2/104‑141 (MQ=255)                                        ttgcgttacccgatcgtgacgatggcgccccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCa                                                                                                       <  2:146526‑M2/41‑1 (MQ=255)                                             ttacccaatcgggacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGCCAAGTCATCATGCAACCAGCGACTAACCGCAGTTaa                                                                                                  <  1:720635‑M2/46‑1 (MQ=255)                                              tacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTaaa                                                                                                 <  1:961725‑M2/47‑1 (MQ=255)                                              tacccaatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGAAAGTCATCATGCAACCAGCGACTAACCGCAGTTaaa                                                                                                 <  2:611900‑M2/47‑1 (MQ=255)                                              tacccaagcgtgacgatgccggcccaggctgccgaactggttttggcgctggcggataatcgccctctcccggaaagcactgttgtctgtagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGTCTAACCGCAGTTaaa                                                                                                 <  2:939549‑M2/47‑1 (MQ=255)                                                   aatcgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAAt                                                                                            >  2:246221‑M2/92‑143 (MQ=255)                                                      cgtgacgatggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTcc                                                                                         >  1:571500‑M2/89‑143 (MQ=255)                                                               ggcgacccaggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCagg                                                                                >  1:464435‑M2/80‑142 (MQ=255)                                                                      caggctgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtcgttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAAttctt                                                                         <  2:296216‑M2/71‑1 (MQ=255)                                                                           tgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCCGTCATTCTTCGATg                                                                    >  1:163487‑M2/68‑143 (MQ=255)                                                                           tgccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATCCTTCGCTg                                                                    >  2:402302‑M2/68‑143 (MQ=255)                                                                             ccgaactggctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGt                                                                  >  1:820324‑M2/66‑143 (MQ=255)                                                                                tactggctttggcgctggcggataaccgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTg                                                               <  2:273925‑M2/81‑1 (MQ=255)                                                                                 actggctttggcgctggcggatagtcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTgg                                                              <  2:89817‑M2/82‑1 (MQ=255)                                                                                 aatggctgttcctctggaggataatctccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTgg                                                              <  1:804627‑M2/82‑1 (MQ=255)                                                                                  ctggctggggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGc                                                             <  1:9865‑M2/83‑1 (MQ=255)                                                                                     gctttggcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGAc                                                          >  1:605325‑M2/58‑143 (MQ=255)                                                                                           gcgctggcgtataatcgccctctcccggaaatcattaatgttttttgtccgACACTGGAGGCAAGTCAACAGGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGaa                                                    <  1:1055792‑M2/92‑1 (MQ=255)                                                                                           gcgctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGCCTAACCGCAGTCAAAGCAATTCCAGCGCCAGTAACTCTTCGACGGTCTGGCGACGGCGaa                                                    >  2:965002‑M2/52‑143 (MQ=255)                                                                                             gctggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCTAATc                                                  >  2:410337‑M2/50‑143 (MQ=255)                                                                                                ggcggataatcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAAc                                               <  1:859371‑M2/97‑1 (MQ=255)                                                                                                   tgataatcgccctctcccggaaatcactaatgtctttagtcctTCGCTGTAGGCAAGTCATCATGCAACAAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACcgc                                            <  1:726664‑M2/100‑1 (MQ=255)                                                                                                     ataatcgccctctcccggaaagcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCGGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCgcgc                                          <  2:476348‑M2/102‑1 (MQ=255)                                                                                                         tcgccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGGCATCATGCAACCAGCGACTAACCGCAGGTAAAGCAATTCCAGCGCCAGTAATTCTCCGATGGTCTGGCGACGGCGACTCAACCgcgccagc                                      >  2:425118‑M2/38‑140 (MQ=255)                                                                                                            ccctctcccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCa                                   >  1:1074914‑M2/35‑143 (MQ=255)                                                                                                              cgcggccggaagtcagtaatgtgtttagtccgTCTCTGGAGGCAAGTCATCATGCAGCCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCAtt                                 <  2:326851‑M2/111‑1 (MQ=255)                                                                                                                  cccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCa                             <  1:795291‑M2/115‑1 (MQ=255)                                                                                                                   ccggaaatcactaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTACTTCTTCGATGGTCTCGCGACGGCGAATCAACCGCGCCTGACCATTCTcag                            >  1:907905‑M2/28‑142 (MQ=255)                                                                                                                       aaatcactaatgtctttagttcgTCGCTTGAGGCAATTCATCATGCAACCTGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAg                        <  1:273662‑M2/120‑1 (MQ=255)                                                                                                                             ctaatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAACGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGCCGCCGCCTCAACCGCGCCTGCCCATTATCAACCAGAACTTc                  >  2:382442‑M2/18‑143 (MQ=255)                                                                                                                              taatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCACCCGCGCCCGACCATTATCACACCGAACTTCt                 >  1:677731‑M2/17‑143 (MQ=255)                                                                                                                              taatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATGCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCt                 >  2:545813‑M2/17‑143 (MQ=255)                                                                                                                              taatgtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCCCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCACACAGGACTTCt                 >  1:490632‑M2/17‑143 (MQ=255)                                                                                                                               aatgtctgtagtgcgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTg                <  2:685317‑M2/128‑1 (MQ=255)                                                                                                                                  gtctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCAAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTa             >  2:1033927‑M2/13‑143 (MQ=255)                                                                                                                                   cggctggtccgTCGCTGTAGGCAAGTCATCATCCGACCAGCGAGTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTaa            <  2:103116‑M2/132‑1 (MQ=255)                                                                                                                                    ctttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACCAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAAc           <  1:161745‑M2/133‑1 (MQ=255)                                                                                                                                     tttagtccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATCATCAAACGGGACTTCTGGTAACa          >  2:936461‑M2/10‑143 (MQ=255)                                                                                                                                     ttcagtccgGCGGTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACa          <  1:732167‑M2/134‑1 (MQ=255)                                                                                                                                       ttgtgcgTCGCTGGAGGGACGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAATCAGAACTTCTGGTAACAGc        <  2:877980‑M2/136‑1 (MQ=255)                                                                                                                                          tccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTCAAGCAATTCCCGCGCCAGGAATTGTTCGCTGGTCTGGAGACGGCGAATCAACAGCGACTGACCATTATCAACAAGAGCTTCTGGTAACAGCGGa     >  2:160160‑M2/5‑143 (MQ=255)                                                                                                                                          tccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGa     <  2:605325‑M2/139‑1 (MQ=255)                                                                                                                                          tccgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGa     <  1:270915‑M2/139‑1 (MQ=255)                                                                                                                                            cgTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGCATCAACCGCGCCTGACCATTATCAAACAGAACTGCTGGTAACAGCGGCCg   >  1:1055257‑M2/3‑143 (MQ=255)                                                                                                                                             gTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACAATTATCAAACAGAACTTCCAGTAACAGCGGACgg  >  2:750707‑M2/2‑143 (MQ=255)                                                                                                                                              |                                                                                                                                              ACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGG  >  NC_000913/2977452‑2977734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑