Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 53 [1] [0] 52 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.020)50 (0.800) 40/268 0.5 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT  >  NC_000913/257769‑258044
                                                                                                                                          |                                                                                                                                         
tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAcgtg                                                                                                                                       >  2:1149253‑M1/1‑139 (MQ=255)
 aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc                                                                                                                                      >  1:538888‑M1/1‑138 (MQ=255)
             aaTGTTGCCAAGGTGGTGAAGCACTTCGATCACAACAGGAGATAGCAAGGCCGCTACCGAGTGGACACCCGAAGAGTAGATTGATCAAAAAACTTACCGCACTTCGCCCGTATATTCGTGAaggtaagtgcaaagataatcga                                                                                                                          <  1:456722/143‑15 (MQ=255)
                     cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                  >  1:960433‑M1/1‑118 (MQ=255)
                     cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                  >  1:919842‑M1/1‑118 (MQ=255)
                      aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGACGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                 >  2:794496‑M1/1‑117 (MQ=255)
                       acttggTAAAACAGTTGCATCACAACAGGAGAGAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAATAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                <  2:88525‑M1/141‑28 (MQ=255)
                       aTTTGGTAAATCAGTTGCAGAACAGCGGGGGATAGCAATGACGTTACCGAGTGGACATCCGAAGAGCAGATTGATCAAAAAATTTACCGCGCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagattatcgattctttttcg                                                                                                                <  2:349401‑M1/143‑28 (MQ=255)
                             tagaacagTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                          <  2:859585‑M1/140‑34 (MQ=255)
                                aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                       <  1:1064528‑M1/143‑37 (MQ=255)
                                   aGTTGCATCACAACATGAGATAGCAATGACAATCCCGAGTGGACACCCGAAGAGCAGATTGATCAAAATATTTAGCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                    <  2:776696‑M1/143‑40 (MQ=255)
                                       gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgcttgtttggctgtatg                                                                                                >  2:771607‑M1/1‑100 (MQ=255)
                                        cATCACAACAGGAGATAGCAATGACGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                               <  1:925501‑M1/143‑45 (MQ=255)
                                          tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcga                                                                                             >  2:349287‑M1/1‑97 (MQ=255)
                                           cacaACATGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                            <  1:29904‑M1/143‑48 (MQ=255)
                                              aattgattatatcaataatgTTACCGATAGGACAACAGAAGAGCAGATTGATCAAAAAACTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                         <  1:190868‑M1/135‑51 (MQ=255)
                                                caGGCGATAGCAATGACGTTACCGAGGGGCCACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                       <  2:583444‑M1/143‑53 (MQ=255)
                                                caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttgttcgattgtctggctgtatgcgtcaacgt                                                                                       >  2:1020791‑M1/1‑91 (MQ=255)
                                                 aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTAGACCCGTGAAGGTCagtgcagagatattcgtttctttttcgcttgtctggctgtatgcgtacacgtg                                                                                      >  1:315188‑M1/1‑90 (MQ=255)
                                                 aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTAAAGATAagtgcaaagataatcgattctcattcgactgtctggatgactgcgtcaacgtg                                                                                      >  2:421914‑M1/1‑90 (MQ=255)
                                                     gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                  <  2:792154‑M1/143‑58 (MQ=255)
                                                     gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                  <  2:170259‑M1/143‑58 (MQ=255)
                                                          caaggccgttaccGAGTGCACACCCGAGCGTCAGGTTGATCAACAATTTTACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgatcctttttcgactgtctggctgtatgcgtcaacgtgaaaccggca                                                                             <  2:562269‑M1/137‑63 (MQ=255)
                                                          cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                             <  1:791159‑M1/143‑63 (MQ=255)
                                                          cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                             <  1:802235‑M1/143‑63 (MQ=255)
                                                          cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                             <  1:435763‑M1/143‑63 (MQ=255)
                                                          cAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                             <  1:209056‑M1/143‑63 (MQ=255)
                                                                cggtaccGAGTGGACACCCGAAGAGCAGATGGATCAAAAGATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                       <  1:457804‑M1/140‑69 (MQ=255)
                                                                 gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcatcaacgtgaaaccggcaccggaac                                                                      >  2:192601‑M1/1‑74 (MQ=255)
                                                                     ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagcgcg                                                                  >  2:287667‑M1/1‑70 (MQ=255)
                                                                         gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgacgtgaaaccggcaccggaagggcgtgaa                                                              >  1:230095‑M1/1‑66 (MQ=255)
                                                                         gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaa                                                              <  1:49012‑M1/143‑78 (MQ=255)
                                                                             acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgagttct                                                          >  2:716564‑M1/1‑62 (MQ=255)
                                                                              cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                         <  1:809546‑M1/143‑83 (MQ=255)
                                                                               ggctgaagtGCAGATGGACCAAAAAATGTCCCGCGCTAGGCCCGTATATTCGCGAAGGTAggtgcaaagataatcgagtctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                        <  2:494209‑M1/139‑84 (MQ=255)
                                                                                     agacaagattgAGAAAAAAAATTACCGTACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagataatcgattcttgttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg                                                  <  1:555344‑M1/138‑90 (MQ=255)
                                                                                      gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                 >  1:375150‑M1/1‑53 (MQ=255)
                                                                                           gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgggggatg                                            >  1:854445‑M1/1‑48 (MQ=255)
                                                                                              tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttgtcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                         <  2:953677‑M1/143‑99 (MQ=255)
                                                                                                ctcAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                       <  1:344078‑M1/142‑101 (MQ=255)
                                                                                                aTCAAAAAATTTACGGTATTAGGCTCATATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                       <  2:182012‑M1/143‑101 (MQ=255)
                                                                                                aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                       >  1:710853‑M1/1‑43 (MQ=255)
                                                                                                    aaaaaTTTACCGTACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                   <  2:736096‑M1/143‑105 (MQ=255)
                                                                                                    aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgaatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtggatggagcaggaa                                   >  2:17721‑M1/1‑39 (MQ=255)
                                                                                                       aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttgttcgatcgtctggctgtatgcgtcaacctgaaaccggcaccggaagtgcgtgaattctcgggcgggtggatggcgtcggatgcg                                >  2:526684‑M1/1‑36 (MQ=255)
                                                                                                         tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatagattgtttttcgagtgtctggatgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgga                              >  1:392437‑M1/1‑34 (MQ=255)
                                                                                                         tctacCGGACTGGGGGCGTATCTTCGTGCAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                              <  1:770640‑M1/141‑110 (MQ=255)
                                                                                                          ttACCGCACTCGGCACTTATAGTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                             <  2:806383‑M1/143‑111 (MQ=255)
                                                                                                                       cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                <  1:71372‑M1/143‑124 (MQ=255)
                                                                                                                                tCGTGAGGGTTagagcgaagataatcgaggctttttcgattgcctggctgtatgcgtcaacgtgcaaccggcaccggaagtgcgtgaagtctggggctggtggatggagcgggaagcgcaggaatcccgttttacctacagtt       <  2:603801‑M1/143‑133 (MQ=255)
                                                                                                                                 cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta      >  1:567614‑M1/1‑10 (MQ=255)
                                                                                                                                   tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctccagttacc    >  2:1035049‑M1/1‑8 (MQ=255)
                                                                                                                                     aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagggatcccgttttacctacagttaccag  >  1:25303‑M1/1‑6 (MQ=255)
                                                                                                                                          |                                                                                                                                         
TAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT  >  NC_000913/257769‑258044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.