Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 53 [1] [0] 52 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.020)50 (0.800) 40/268 0.5 99.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAG  >  NC_000913/258545‑258820
                                                                                                                                           |                                                                                                                                        
taaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaCGTg                                                                                                                                       >  2:1149253‑M2/140‑143 (MQ=255)
 aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                                                                                                                      >  1:538888‑M2/139‑143 (MQ=255)
                     caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                  >  1:919842‑M2/119‑143 (MQ=255)
                     caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                  >  1:960433‑M2/119‑143 (MQ=255)
                      aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgacgagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                 >  2:794496‑M2/118‑143 (MQ=255)
                       atttggtaaatcagttgcagaacagcgggggatagcaatgacgttaccgagtggacatccgaagagcagattgatcaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATTATCGATTCTTTTTCg                                                                                                                <  2:349401‑M2/27‑1 (MQ=255)
                       acttggtaaaacagttgcatcacaacaggagagagcaatgacgttaccgagtggacacccgaagagcagattgatcaaataatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                                                                                                                <  2:88525‑M2/27‑1 (MQ=255)
                             tagaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                          <  2:859585‑M2/33‑1 (MQ=255)
                                aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                       <  1:1064528‑M2/36‑1 (MQ=255)
                                   agttgcatcacaacatgagatagcaatgacaatcccgagtggacacccgaagagcagattgatcaaaatatttagcgcactcggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg                                                                                                    <  2:776696‑M2/39‑1 (MQ=255)
                                       gcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGCTTCTTTTTCGCTTGTTTGGCTGTATg                                                                                                >  2:771607‑M2/101‑143 (MQ=255)
                                        catcacaacaggagatagcaatgacggtaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                               <  1:925501‑M2/44‑1 (MQ=255)
                                          tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGcga                                                                                             >  2:349287‑M2/98‑142 (MQ=255)
                                           cacaacatgagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc                                                                                            <  1:29904‑M2/47‑1 (MQ=255)
                                              aattgattatatcaataatgttaccgataggacaacagaagagcagattgatcaaaaaacttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                         <  1:190868‑M2/50‑1 (MQ=255)
                                                caggcgatagcaatgacgttaccgaggggccacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                       <  2:583444‑M2/52‑1 (MQ=255)
                                                caggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTGTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                       >  2:1020791‑M2/92‑143 (MQ=255)
                                                 aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtagacccgtgaaggtcAGTGCAGAGATATTCGTTTCTTTTTCGCTTGTCTGGCTGTATGCGTACACGTg                                                                                      >  1:315188‑M2/91‑143 (MQ=255)
                                                 aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgcatattcgtaaagataAGTGCAAAGATAATCGATTCTCATTCGACTGTCTGGATGACTGCGTCAACGTg                                                                                      >  2:421914‑M2/91‑143 (MQ=255)
                                                     gatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAc                                                                                  <  2:170259‑M2/57‑1 (MQ=255)
                                                     gatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAc                                                                                  <  2:792154‑M2/57‑1 (MQ=255)
                                                          caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                             <  1:791159‑M2/62‑1 (MQ=255)
                                                          caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                             <  1:802235‑M2/62‑1 (MQ=255)
                                                          caatgacgttaccgagtggacacccgaagagcagattgagcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                             <  1:435763‑M2/62‑1 (MQ=255)
                                                          caaggccgttaccgagtgcacacccgagcgtcaggttgatcaacaattttaccgccctaggcccgtatattcgtgaaggtaAGTGCAACGATAATCGATCCTTTTTCGACTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                             <  2:562269‑M2/62‑1 (MQ=255)
                                                          caaggacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                             <  1:209056‑M2/62‑1 (MQ=255)
                                                                cggtaccgagtggacacccgaagagcagatggatcaaaagatttaccgcactaggcccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGaa                                                                       <  1:457804‑M2/68‑1 (MQ=255)
                                                                 gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCATCAACGTGAAACCGGCACCGgaac                                                                      >  2:192601‑M2/75‑142 (MQ=255)
                                                                     ccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGcgcg                                                                  >  2:287667‑M2/71‑143 (MQ=255)
                                                                         gtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCGACGTGAAACCGGCACCGGAAGGGCGTGaa                                                              >  1:230095‑M2/67‑143 (MQ=255)
                                                                         gtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaa                                                              <  1:49012‑M2/77‑1 (MQ=255)
                                                                             acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGCTAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGGGCGTGAGTTCt                                                          >  2:716564‑M2/63‑143 (MQ=255)
                                                                              cacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                         <  1:809546‑M2/82‑1 (MQ=255)
                                                                               ggctgaagtgcagatggaccaaaaaatgtcccgcgctaggcccgtatattcgcgaaggtaGGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGGCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgg                                                        <  2:494209‑M2/83‑1 (MQ=255)
                                                                                     agacaagattgagaaaaaaaattaccgtactaggcccgtatattagtgaaggtaAGTGCAAAGATAATCGATTCTTGTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtgg                                                  <  1:555344‑M2/89‑1 (MQ=255)
                                                                                      gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                 >  1:375150‑M2/54‑143 (MQ=255)
                                                                                           gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGgggatg                                            >  1:854445‑M2/49‑143 (MQ=255)
                                                                                              tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTGTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                         <  2:953677‑M2/98‑1 (MQ=255)
                                                                                                ctcaaaaaatttcccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCt                                       <  1:344078‑M2/100‑1 (MQ=255)
                                                                                                atcaaaaaatttacggtattaggctcatatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCt                                       <  2:182012‑M2/100‑1 (MQ=255)
                                                                                                atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCt                                       >  1:710853‑M2/44‑143 (MQ=255)
                                                                                                    aaaaatttaccgtactaggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                   <  2:736096‑M2/104‑1 (MQ=255)
                                                                                                    aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGAATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATGCTGGGGCTGGTGGATGGAGCAGGaa                                   >  2:17721‑M2/40‑143 (MQ=255)
                                                                                                       aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTGTTCGATCGTCTGGCTGTATGCGTCAACCTGAAACCGGCACCGGAAGTGCGTGAATtctcgggcgggtggatggcgtcggatgcg                                >  2:526684‑M2/37‑132 (MQ=255)
                                                                                                         tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTGTTTTTCGAGTGTCTGGATGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaagcgga                              >  1:392437‑M2/35‑141 (MQ=255)
                                                                                                         tctaccggactgggggcgtatcttcgtgcaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                              <  1:770640‑M2/109‑1 (MQ=255)
                                                                                                          ttaccgcactcggcacttatagtcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAg                             <  2:806383‑M2/110‑1 (MQ=255)
                                                                                                                       cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                <  1:71372‑M2/123‑1 (MQ=255)
                                                                                                                                tcgtgagggttAGAGCGAAGATAATCGAGGCTTTTTCGATTGCCTGGCTGTATGCGTCAACGTGCAACCGGCACCGGAAGTGCGTGAAGTCTGGGGCTGGTGGATGGAGCGGGAAGCGCAGGAATCCCGTTTTACCTACAGtt       <  2:603801‑M2/132‑1 (MQ=255)
                                                                                                                                 cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTa      >  1:567614‑M2/11‑143 (MQ=255)
                                                                                                                                   tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTCCAGTTAcc    >  2:1035049‑M2/9‑143 (MQ=255)
                                                                                                                                     aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGGATCCCGTTTTACCTACAGTTACCAg  >  1:25303‑M2/7‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                        
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAG  >  NC_000913/258545‑258820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.