| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4049912 = | 0 (0.000) | 43 (0.960) | 35/284 | 0.2 | 100% | noncoding (15/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 | 4498182 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA | |||||
TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050053‑4049912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG > NC_000913/4498182‑4498321 TGATAAACCTCCCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTAT < 2:368851/143‑1 acaccaCGCATCAGGCATTACGTATCTCTTCTTTCGCCCAGTAAAAAACGCCCCCGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTG < 2:226612/137‑1 TCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTATGAAAGATAGAAGATCTTATAGAGTGGCCCCCTGca > 2:23066/1‑141 cagTACGGATCTTTTCTTTCTCCTATTAAAAATCGCCCCTGTCATTACTGACTGGGGCGGCTAATATATTAAGCCAAATACGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:11559/140‑1 CATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:455550/143‑1 CATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:199755/143‑1 GGATCTTTTCTTTCGCCCAATAAAAAACGCCCTAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATACTATAGACTGGCCCCCTGAAACTCCCGACAA > 2:409407/1‑143 GGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACAGGCCGCCTGGATCTCCAGACAA > 2:122469/1‑143 GCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATGCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAA > 2:653200/1‑143 tattttagcCGCCCCAGTCAGTAATAACTGGGGCAGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGACTCTCCAGACCACCAATATCCCTTAAgtga > 1:576860/10‑139 AATAAAAAACGCTCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 1:669625/143‑1 AATAAAAAACGCCGCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 2:682479/143‑1 AAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA < 1:510659/143‑1 AGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA < 2:180718/143‑1 GTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC < 2:527573/143‑1 ATTACTGACTGGGGCGGACAAAATAATCAGCCAAATCCGATTACGTGAAGTAAAAGGACTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAACACATGATAGTCATAATACTAG > 2:96295/1‑143 GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:84854/143‑1 GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:419568/143‑1 CTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGA < 2:222611/143‑1 GGGCGGCTAAAATATACAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCCTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA < 1:320159/143‑1 GCTAAAAGATTCAGCCGAATCCGATTACGTGAAGGAAAAGGTCTGAAAGAGAGAACATCATATAGACTGGCCCCCTGTATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT < 2:128744/143‑1 TAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGATTTTAGACTAGTCATTG > 2:393882/1‑143 AAATATTCAGCCAAATCCGAGTACGTGAAGTAAAAGGTCTGAAAGATAGCACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA < 1:194453/143‑1 AAATATGCAGCCAACGCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA < 2:589112/143‑1 TATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA < 1:490479/143‑1 ataCAGCCAAATCCGAGTACGTGAAGAAAAAGGACTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC < 1:149554/140‑1 ATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACATCCACTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTAATTGAAAAAC > 1:46250/1‑143 AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAATAGTTTTTAGACTAGTCATTGGAGAACAGAT > 2:373885/1‑143 CAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT > 1:716456/1‑143 CAAAGCCGAGTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTAGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT < 2:585954/143‑1 AAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTGGTCATTGGAGAACAGATGATT > 1:270535/1‑143 AATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCAAGACAAGCAATATCACTTAAATACATCATAGTCTAAAGACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG > 1:773307/1‑143 atGTGAAGTCACAGCTCGGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG < 2:687633/141‑1 ACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAGGATAGATGTGTTgg > 1:733574/1‑141 tTGACGTAAAAGGTCTGACAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAGATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGG < 2:403027/142‑1 AAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCCATATCGCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTGATAGGGCCGGCGAc > 2:721797/1‑142 AAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATACGTGATCGCCTTAATACTAGTTTTTAGACTAGTCATTGGAGCACAGATGCTTGCTCGCTCAGGGGCGGAGAg > 2:713239/1‑142 GAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTCGAGAACAGATGATTAATGTCTTAGGACCGGAGAAACGCAGAC > 2:508764/1‑143 AAGATAGAACCTCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG < 1:231779/143‑1 TAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGACAATGGAGAACAGAGGATTGATGTCTTAGGGCCGGAGAAGCGCAGAGGGCGTc > 2:384170/1‑142 GAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACC > 2:364905/1‑143 TCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAACTTATTGTTTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA < 1:653200/143‑1 TTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGACGATTGATGGCTTAGGGCGGGAGAAACGCAGACGGCGGACCACACAGG > 1:71506/1‑143 TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050053‑4049912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG > NC_000913/4498182‑4498321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |