New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40499182 (0.040)72 (1.330) 58/280 0.0 97.3% noncoding (21/109 nt) spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
?NC_000913 = 4499510 NA (NA)intergenic (+9/+84) insD1/yjgX IS2 transposase TnpB/pseudogene fragment

TAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4049778‑4049918
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTC  <  NC_000913/4499510‑4499369
                                                                                                                                                                                                                                                                                           
acacTAAGCAAAATAAGCTGTCACGTGTTGTAATGGCTATTAGAAATTCCTATACAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGA                                                                                                                                              <  1:688984/139‑1
TAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAAATCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGAAAGATGGA                                                                                                                                              >  1:265137/1‑143
   gaAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAAGTCCTATGCAACAACTGAAAAAAAAGTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTT                                                                                                                                           <  2:503038/141‑1
   GTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTT                                                                                                                                           <  2:335070/143‑1
     AAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAAAAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGC                                                                                                                                         <  2:342418/143‑1
       GCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCC                                                                                                                                       <  2:135773/143‑1
         AACATAAGCTGTCACGGTTTGTGATGGCTATTAGAAAGTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCT                                                                                                                                     <  1:334984/143‑1
                GCTGTCACGTTTTGTGCTGGCTATTAGAAATTCCTATGCAACACCCAGCAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAACGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTC                                                                                                                              <  2:650975/143‑1
                GCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTC                                                                                                                              <  2:824053/143‑1
                 CTGGCACGTTTTGTGATGGCTATTAGAAATTCGTATGCAACAACGGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCC                                                                                                                             <  1:759753/143‑1
                  tgagACGTTTGATAATGGTTAGTAGAAGTTGCTATGCAACAACTGAAAAAAAATTACAAAGAGTGCTTTCTGAACTAAAACAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCA                                                                                                                            <  1:464788/139‑1
                  TGTCACGTGTAGTGATGGCTATTAGAAATTCCTAGGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCA                                                                                                                            <  1:731509/143‑1
                    TCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACCGAGGTAAGATGGATCTGCCCCCATATTTCCAGA                                                                                                                          >  1:240143/1‑143
                      ACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGCACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGAAAGATGGATTTGCCCCTATGTTTGCAGACA                                                                                                                        >  1:531870/1‑143
                      ACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGAAAAGTAAGTCGCGTACGGTAGAGAGGTAAGATGGATTAGCCCCTAAGGTTCCAGAaa                                                                                                                        >  1:900652/1‑141
                       CGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACCAAAAGTGCTTTCTGAACTGAACAAAACAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACAT                                                                                                                       <  2:67474/143‑1
                         TTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCT                                                                                                                     >  1:83891/1‑143
                          TTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTG                                                                                                                    >  2:798585/1‑143
                                  GGCTATTAGAAATTCCTATGCACCAACAGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACT                                                                                                            <  1:804414/143‑1
                                    CTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATAACTTA                                                                                                          >  1:305183/1‑143
                                     TATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGACCAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACGTCTGTGATCACTTgc                                                                                                         >  2:364786/1‑141
                                     TATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAA                                                                                                         <  2:842328/143‑1
                                      ATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAC                                                                                                        <  1:262607/143‑1
                                       TTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACC                                                                                                       >  2:938897/1‑143
                                             ATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC                                                                                                 >  1:734235/1‑143
                                                  TATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCC                                                                                            >  2:3937/1‑143
                                                      CAACAACGGAAAAAAAAGTACAAAAAGTGCGTGCGGAACGGAACGAAAAAGAGGAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCT                                                                                        <  2:35280/143‑1
                                                       AACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGATAACACTTAACCGATTACAAGCCCGCTG                                                                                       >  1:863784/1‑143
                                                          aaaTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG                                                                                    <  2:528304/140‑1
                                                          AACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTCGAGTACCGAGGTAAGATGGATTTCCCCCTCTATTTCCAGACAACTGTCATCCCTTCACACATTACAAGACCGCCGCCa                                                                                    >  1:686951/1‑142
                                                             TGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAG                                                                                 <  1:99355/143‑1
                                                               AAAAAAAATTACAAAAAGTGCTTTCTGGACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT                                                                               >  1:72998/1‑143
                                                               AAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT                                                                               >  2:810344/1‑143
                                                                   AAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTCCCGCTGATATTC                                                                           >  2:506034/1‑143
                                                                    AAATTACAAAAACTTCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCC                                                                          <  2:832407/143‑1
                                                                       TTACAAAAAGTGCCTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGCAGGATACATAGGGAAGGTGGGTTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCct                                                                       >  2:179722/1‑141
                                                                         ACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGG                                                                     <  2:230615/143‑1
                                                                            AAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA                                                                  <  2:331689/143‑1
                                                                              AAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCGCGTGGCGAGC                                                                >  2:52442/1‑143
                                                                                      TCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATCACCC                                                        >  1:636050/1‑143
                                                                                        TGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAG                                                      <  2:400728/143‑1
                                                                                         GAACTTAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGC                                                     <  1:133528/143‑1
                                                                                                 CAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATCCCCGTGGCGCGCGATCACACAGCGCcatctg                                             >  1:447394/1‑137
                                                                                                 CAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATCCCCGTGGCGAGCGATAACCCAGCGCACTATG                                             >  2:829047/1‑143
                                                                                                  acagaataggAAAGTTCGTCCCGTAGAGTACAGATGTAGGATGGATTTGCCCCTCTACTTCCAGACATCTGTTAGCACTTAACCCACTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                            <  1:431765/133‑1
                                                                                                  AAAAAAGAGTAAAGTTAGTCGCGTAGTGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                            <  2:248428/143‑1
                                                                                                  AAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                            <  1:558398/143‑1
                                                                                                  AAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                            <  2:614688/143‑1
                                                                                                   AAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCc                                           >  1:229861/1‑142
                                                                                                    AAAAGAGTAAAGTTAGTCGCGTAGTGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCTCTGCCGCACATATTCCCGTGGCGCACTATACCCCCGCGCACCATGCGG                                          >  1:236947/1‑143
                                                                                                    AAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGG                                          <  2:9623/143‑1
                                                                                                    AAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAAAGATAACACAGCGCACTATGCGG                                          >  1:480143/1‑143
                                                                                                      AAGAGTATAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAT                                        <  2:528515/143‑1
                                                                                                      AAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAT                                        <  1:938897/143‑1
                                                                                                      AAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAT                                        <  1:798585/143‑1
                                                                                                        GAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGC                                      <  2:83891/143‑1
                                                                                                           TAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGACAT                                   >  2:549738/1‑143
                                                                                                           TAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCGGCCGCAGATATTCCCGTGGCGAGCGATAACCCCGCGCACTCTGCGGCTGCCAg                                   >  2:172427/1‑142
                                                                                                           TAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATCGATCTGCCCCTATCTTTCCAGCCATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCCAGCGATAACCCACCGCACTATGCAGAcaccaa                                   >  2:656793/1‑137
                                                                                                            AAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATT                                  <  1:219371/143‑1
                                                                                                                TTAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGACCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTACCGTGGCGAGCGATAACCCAGCGCACTATGCGGAGGCCATTAGTT                              >  1:48302/1‑143
                                                                                                                 TAGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTCTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTA                             <  1:695148/143‑1
                                                                                                                  AGTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATCCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGCTGCCATTCGGTAT                            >  1:777892/1‑143
                                                                                                                   GTCGCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATA                           <  1:3937/143‑1
                                                                                                                      GCGTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTACCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTCATAATG                        >  1:405686/1‑143
                                                                                                                        GTAGGGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCT                      <  1:398611/143‑1
                                                                                                                         tacGGTACACAGGTAAGATCGATTTGCCCCTATCTCTCCAGACCTCTGTTATCACTTAACCCATTACAATCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTC                     <  2:190062/140‑1
                                                                                                                            GGTACAGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAA                  <  2:734235/143‑1
                                                                                                                             GTACAGAGGTAAGATGGATTGGCCCGTATATTTCCAGACATCTGTTATCACTCAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAAC                 <  1:658598/143‑1
                                                                                                                                 AGAGGTAAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATCCTCGAACGCCT             >  1:387551/1‑143
                                                                                                                                     ggAAGATGGACTTGCCCCTATATTTCCAGACCTCCGTTATCACTTAACCCATTACACGCCCGCTGCCGCCTATATTCCCGTGGCCATTGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGC         <  1:307649/141‑1
                                                                                                                                       AAGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAA       <  2:72998/143‑1
                                                                                                                                           TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGCTATTCCTGTGGCGAGCGATAACCCAGCGCACTATGCGTCTGTCTTTCGATATAATGCTCAAAAGCCaatgaaagatt   >  2:76649/1‑132
                                                                                                                                           TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCGTCTGCAAGGTT   >  1:685781/1‑143
                                                                                                                                           TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTT   >  2:591613/1‑143
                                                                                                                                           TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGAAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATCCGTACAAATACTCGAACGCCCCTGCCAGGTT   >  1:139729/1‑143
                                                                                                                                            GGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCagatcggaagag  <  1:625981/143‑13
                                                                                                                                            GGATTTGCCCCTATATGTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTC  <  2:164005/143‑1
                                                                                                                                            GGATTTGCCCCTATACTTCCATGCATCTGTTATCACGTACCCCATTACATGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTC  <  1:274406/143‑1
                                                                                                                                                                                                                                                                                           
TAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4049778‑4049918
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTC  <  NC_000913/4499510‑4499369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.