New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1200233	38 (0.700)	3 (0.060)	3/462	NT	8.1%	coding (574/1128 nt)	intE	e14 prophage, putative integrase
	?	NC_000913	= 1200412	32 (0.620)					coding (395/1128 nt)	intE	e14 prophage, putative integrase

CACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATAT  >  NC_000913/1199960‑1200499                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           cACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGt                                                                                                                                                                                                                                                                           >  1:339047/1‑275 (MQ=255)      actgCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGt                                                                                                                                                                                                                                                                      >  1:37087/1‑275 (MQ=255)                cACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttctt                                                                                                                                                                                                                                                            >  2:358559/1‑275 (MQ=255)                           aggcatctcgtcgtgcaaCTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTACTTTTTCTTCTTGGTTGttt                                                                                                                                                                                                                                                 >  1:401855/17‑275 (MQ=255)                              actacATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTa                                                                                                                                                                                                                                                <  1:205920/273‑1 (MQ=255)                                    tCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTATCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGatgtcagagatatagcacaattgcttgatgag                                                                                                                                                                                                                                            <  1:194408‑M1/271‑33 (MQ=255)                                     cgcgTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTTAt                                                                                                                                                                                                                                       >  2:404991/1‑275 (MQ=255)                                     cgcgTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGACATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGACGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTGGTGGCTAAt                                                                                                                                                                                                                                       >  1:215233/1‑275 (MQ=255)                                         tAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt                                                                                                                                                                                                                                    <  1:321557/274‑1 (MQ=255)                                         tAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt                                                                                                                                                                                                                                    <  2:37087/274‑1 (MQ=255)                                                   gtagtCGCAGTTAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCATTTCCTGAATGACATGAGGATGATCATCCCAAATAGCGCTAAATTTCATACGCGAAATATCACCTAACCGCTAACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGGTGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGATAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTAGGTTATAGcc                                                                                                                                                                                                                         <  2:108547/271‑1 (MQ=255)                                                    tAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCCAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCa                                                                                                                                                                                                                        <  1:62142/275‑1 (MQ=255)                                                        cGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTTGTTGTTTAGTGTCTACTGCTGGGTTATAGCCaggag                                                                                                                                                                                                                    >  1:16606/1‑275 (MQ=255)                                                           aTTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa                                                                                                                                                                                                                 <  1:384639/275‑1 (MQ=255)                                                           aTTGAGGCGAAGAGAAAGAGGAATTGCGATTATGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa                                                                                                                                                                                                                 <  1:510999/275‑1 (MQ=255)                                                              gAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACtt                                                                                                                                                                                                              <  1:358560/275‑1 (MQ=255)                                                                                 aTTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTCGTGCTGCGCctc                                                                                                                                                                                           >  2:295094/1‑275 (MQ=255)                                                                                       aTTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTGGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGaa                                                                                                                                                                                     <  2:215232/275‑1 (MQ=255)                                                                                                      ttttCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGAc                                                                                                                                                                      <  2:339046/275‑1 (MQ=255)                                                                                                                                  cccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGgc                                                                                                                                          >  2:283207/1‑275 (MQ=255)                                                                                                                                      aaTATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGgccgcc                                                                                                                                      <  1:283208/275‑1 (MQ=255)                                                                                                                                         atCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAg                                                                                                                                   <  1:459575/275‑1 (MQ=255)                                                                                                                                           cGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAg                                                                                                                                   <  2:82214/273‑1 (MQ=255)                                                                                                                                            gCTAAATTTCATACGCGAAATATCACCTAACCCCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAATGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcg                                                                                                                                 <  2:421840/274‑1 (MQ=255)                                                                                                                                               aaaTTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCg                                                                                                                                                                                                                                                                         <  1:258030/135‑1 (MQ=255)                                                                                                                                                       aaCGCGAAATATCACCTAACCGCTGGCCAGTAACCAGCGGTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACtca                                                                                                                     <  2:530942/274‑1 (MQ=255)                                                                                                                                                            gAAAGATCACCTAACCCCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAg                                                                                                                <  2:208790/275‑1 (MQ=255)                                                                                                                                                               atatacccTAACCGCGGACAAGTAACCAGCGCAAACAGCAGGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGATCAGCCGGTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACGTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCaa                                                                                                             <  2:4387/269‑1 (MQ=255)                                                                                                                                                               atatCCCCGAACCGCGGCCCAGTAACCGCGGCTAACAGAATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCaa                                                                                                             <  2:60110/275‑1 (MQ=255)                                                                                                                                                                taacACCTAACTGCTGACAAGTAACAAGACCTAACAGCATGGCATTTCCCATGTAACGATGAGGAGCGTCTGGGATATCGAAGATTTTTTTACATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAAt                                                                                                            <  1:259259/272‑1 (MQ=255)                                                                                                                                                                        aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTACTGCTGGGTTCTAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCta                                                                                                     >  1:494548/1‑274 (MQ=255)                                                                                                                                                                        aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGt                                                                                                                                                                                                                  >  2:222023/1‑165 (MQ=255)                                                                                                                                                                        aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACGTCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTTGCAGCCCAGCGGCGATATACTCATCAAGCCATTGTGCta                                                                                                     >  1:406624/1‑274 (MQ=255)                                                                                                                                                                          cctcTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTGCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGGTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCtata                                                                                                   <  2:294813/271‑1 (MQ=255)                                                                                                                                                                          ccGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGatgtcagagatatagcacaattgcttgatgagtatatcgccgctgggcggccaagaatggcacaagtagttcgctccgtcctgattgatgttttcaaagaggcgcagcactacggagaagtacctcctggctataacccagcattagccactaaacaaccaa                                                                                                          >  1:118918‑M1/1‑105 (MQ=255)                                                                                                                                                                            gCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACtt                                                                                                                                                                                                              <  1:222024/165‑1 (MQ=255)                                                                                                                                                                              tGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGatgtcagagatatagcacaattgcttgatgagtatatcgccgctgggcggccaagaatggcacaagtagttcgctccgtcctgattgatgttttcaaagaggcgcagcactacggagaagtacctcctggctataacccagcattagccactaaacaaccaagaag                                                                                                      <  2:118917‑M1/267‑167 (MQ=255)                                                                                                                                                                               gACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTAGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTg                                                                                             >  1:19085/1‑275 (MQ=255)                                                                                                                                                                                            cgcTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCCTTCTTGGCCGCCCAGCGGCGCTATACTCATACAGCAATTGTGCTATCTCTCTGACATcaacggct                                                                                 <  1:519729‑M2/274‑9 (MQ=255)                                                                                                                                                                                            cgcTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGgccgc                                                                                                                                       >  1:147153/1‑220 (MQ=255)                                                                                                                                                                                                aaCAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAg                                                                                                                                   <  2:147152/220‑1 (MQ=255)                                                                                                                                                                                                                                   gTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTAGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATa                                         <  2:19085/275‑1 (MQ=255)                                                                                                                                                                                                                                                        tttCCATTCTGCAAGGTTCAGCCGTTGTCTGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAAGGCTTGGTTATAGCCAGGAGGTAATTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTtat                    <  2:280127/275‑1 (MQ=255)                                                                                                                                                                                                                                                               tttttaaGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGtt             <  2:88721/270‑1 (MQ=255)                                                                                                                                                                                                                                                                         tCAGCCGTTGatgtcagagatatagcacaattgcttgatgagtatatcgccgctgggcggccaagaatggcacaagtagttcgctccgtcctgattgatgttttcaaagaggcgcagcactacggagaagtacctcctggctataacc                                                                                                                                  <  1:505574‑M1/148‑139 (MQ=255)                                                                                                                                                                                                                                                                           aGCCGTTGatgtcagagagatagcacaattgctgtatgagtatagcgccgctgggcggccaagaagggcacaagtagttcgctccgtcctgattgatgttttcaaagaggcgcagcactacggagaagtacctcctggctataacccagcattagccactaaacaaccaagaagaaaaattacccgacaacggctgagccttgaagaatggaaaaaaatcttcgatatcgcagacgctactcatcgttacatgggaaatgccatgctgttagcg  <  1:519729‑M1/274‑267 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           CACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATAT  >  NC_000913/1199960‑1200499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.