New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1200233	38 (0.700)	3 (0.060)	3/462	NT	8.1%	coding (574/1128 nt)	intE	e14 prophage, putative integrase
	?	NC_000913	= 1200412	32 (0.620)					coding (395/1128 nt)	intE	e14 prophage, putative integrase

CGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGTTCCCA  >  NC_000913/1200147‑1200685                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                  cgcTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCCTTCTTGGCCGCCCAGCGGCGCTATACTCATACAGCAATTGTGCTATCTCTCTGACATcaacggct                                                                                                                                                                                                                                                                           <  1:519729‑M2/274‑9 (MQ=255)                                        gTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTAGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATa                                                                                                                                                                                                                                   <  2:19085/275‑1 (MQ=255)                                                             tttCCATTCTGCAAGGTTCAGCCGTTGTCTGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAAGGCTTGGTTATAGCCAGGAGGTAATTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTtat                                                                                                                                                                                                              <  2:280127/275‑1 (MQ=255)                                                                    tttttaaGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGtt                                                                                                                                                                                                       <  2:88721/270‑1 (MQ=255)                                                                                                     cttcttGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATcaacggctgagccttgaagaatggaaaaaaatcttcgatatcgcagacgctactcatcgttacatgggaaatgccatgctgttagcgctggttactggtca                                                                                                                                                                              <  2:118917‑M2/267‑102 (MQ=255)                                                                                                         ttGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATcaacggctgagccttgaagaatggaaaaaaatcttcgatatcgcagacgctactcatcgttacatgggaaatgccatgctgttagcgctggttactggtcagcgg                                                                                                                                                                          >  1:118918‑M2/1‑162 (MQ=255)                                                                                                           ggTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTATCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGa                                                                                                                                                                 >  2:154662/1‑274 (MQ=255)                                                                                                                          aaTGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATc                                                                                                                                                 >  2:400432/1‑275 (MQ=255)                                                                                                                             gCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTaa                                                                                                                                              <  2:494547/275‑1 (MQ=255)                                                                                                                                 ggTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATcaacggctga                                                                                                                                                                                                                                                                         <  1:505574‑M2/148‑11 (MQ=255)                                                                                                                                 ggTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTTAGCAAGGTTCCTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTtattt                                                                                                                                                                                            >  2:393551/1‑223 (MQ=255)                                                                                                                                     ataGCCAGGGAGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACGTGTGCCATTCTTTGCAGCCCAGAGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATcacc                                                                                                                                                                                        <  1:393552/225‑1 (MQ=255)                                                                                                                                     ataGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATc                                                                                                                                                                                                                                                                     <  2:505573/148‑1 (MQ=255)                                                                                                                                      taGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCACCTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGa                                                                                                                                     >  1:384316/1‑275 (MQ=255)                                                                                                                                           aggaggTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCa                                                                                                                                                                                                                                                              >  1:100135/1‑149 (MQ=255)                                                                                                                                             gaggTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTtgtg                                                                                                                              >  1:155249/1‑275 (MQ=255)                                                                                                                                               ggTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTcc                                                                                                                                                                                                                                                          <  2:100134/149‑1 (MQ=255)                                                                                                                                                gTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTtgtg                                                                                                                              >  2:326068/1‑272 (MQ=255)                                                                                                                                                  aCTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGTTAGc                                                                                                                         >  1:138413/1‑275 (MQ=255)                                                                                                                                                               gctgcGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGc                                                                                                              <  1:295095/273‑1 (MQ=255)                                                                                                                                                                   cgcCTCTTTGAAAACATCAATCAGGACGGAGCGCACTACTTGTGCCACTCTTGGCCGCCCAGCGGCGAAATACTCATCAAGCAATCGTGCTATATCACTGACATCAACGGCTGTGATCAACATCATTCCTGCCTGTTCTCTGCGCCAGGCAACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGCCTTATCTCCCCTCTTTTAAGCCTGCCATCCTGGCTCGCTGTACACCGATCTAACCAGGTTGACGTTCTGTTAGCCTTTCCTTAGCTTGtcg                                                                                                        >  2:216773/1‑273 (MQ=255)                                                                                                                                                                   cgcCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCAt                                                                                                                                                                       >  2:515724/1‑212 (MQ=255)                                                                                                                                                                     ccTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCg                                                                                                      >  1:314705/1‑275 (MQ=255)                                                                                                                                                                       tctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTg                                                                                                                                                                   <  1:515725/212‑1 (MQ=255)                                                                                                                                                                        ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAg                                                                                                                                                                                                                                       >  1:244608/1‑143 (MQ=255)                                                                                                                                                                           tGAAAACATAAATCAGGACGGGGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCTGCGGTATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTg                                                                                                <  2:401854/275‑1 (MQ=255)                                                                                                                                                                            gAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATa                                                                                                                                                                                                                                   <  2:244607/143‑1 (MQ=255)                                                                                                                                                                                  atcaatcaGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGAt                                                                                                                                                                >  2:22931/1‑204 (MQ=255)                                                                                                                                                                                                aGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGc                                                                           >  1:418061/1‑275 (MQ=255)                                                                                                                                                                                                                 aTTCTTGGCCGCCCAGCAGCGATATCCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGc                                                          <  2:420439/275‑1 (MQ=255)                                                                                                                                                                                                                   tCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTTCCCCTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGcc                                                         >  2:70078/1‑274 (MQ=255)                                                                                                                                                                                                                      tGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGc                                                     <  2:519728/275‑1 (MQ=255)                                                                                                                                                                                                                                           cTCATCAAGCAATTGTGCTATATCTCTGACATcaacggctgagccttgaagaatggaaaaaaatcttcgatatcgcagacgctactcatcgttacatgggaaatgccatgctgttagcgctggttactggtcagcggataggtgatatttcgcgtatgaaatttagcgatatttgggatgatcatcttcatgtcattcaggaaaagaccgggagcaaaatcgcaattcctctttctcttcgcctcaatgcgattaactggagtttacgcga                                    <  1:194408‑M2/271‑240 (MQ=255)                                                                                                                                                                                                                                                caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATc                                                                                                                                                 >  1:415806/1‑157 (MQ=255)                                                                                                                                                                                                                                                    cAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAAc                                                                                                                                             <  2:415805/157‑1 (MQ=255)                                                                                                                                                                                                                                                              atatCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGCGTCTTGGCCTCAGTGGCCATAGCGATcgcttcagctt              >  2:369022/1‑274 (MQ=255)                                                                                                                                                                                                                                                                   tctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGttt         <  2:418060/274‑1 (MQ=255)                                                                                                                                                                                                                                                                    ctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGt       >  2:300199/1‑275 (MQ=255)                                                                                                                                                                                                                                                                          tCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCTGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGTTCCCa  <  1:326069/274‑1 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                  CGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGCTTCAGCTTCGTTTGTTCCCA  >  NC_000913/1200147‑1200685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.