New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2887322 =	47 (0.870)	3 (0.060)	3/468	NT	7.0%	intergenic (‑105/‑30)	ygcB/sokX	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/sok‑related sRNA, function unknown
	?	NC_000913	2887733 =	34 (0.650)					coding (578/735 nt)	cysH	phosphoadenosine phosphosulfate reductase, PAPS reductase, thioredoxin dependent

ATTTCGGCAAAAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACC  >  NC_000913/2887053‑2887592                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                taccgtgctaccgaaagcgcagcctggcaggaagcacgctacggaaaactgtgggagcagggcgttgaaggcattgaaaagtacaatgacatcaacaaagtcgaaccgatgaaccggggtctgaaagaactgaatgcgcaaacctggtttgctggcctgcgccgtgaacaatccggcagtcgtgccaatttaccggtgctggcaattcagcgtggcgtatttaaagtgctgccgattatcgactgggataaccgaactatttatcagtaCC‑TGCa                                                                                                                                                                                                                                                                           <  2:452589‑M1/6‑1 (MQ=255) taccgtgctaccgaaagcgcagcctggcaggaagcacgctacggaaaactgtgggagcagggcgttgaaggcattgaaaagtacaatgacatcaacaaagtcgaaccgatgaaccgggctctgaaagaactgaatgcgcaaacctggtttgctggcctgcgccgtgaacaatccggcagtcgtgccaatttaccggtgctggcaattcagcgtggcgtatttaaagtgctgccgattatcgactgggataaccgaactatttatcagtaCC‑TGCa                                                                                                                                                                                                                                                                           <  1:282368‑M1/6‑1 (MQ=255)                                   tgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCg                                                                                                                                                                                                                                         >  2:398202/1‑275 (MQ=255)                                     atCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGa                                                                                                                                                                                                                                        <  1:151957/274‑1 (MQ=255)                                         caacatcAATCGGCAACAGTAGCAAAAACAACGCAATGATAAAATAACAGATTAATATCATTTCCTTTCGTCAAGCTGTTTGAGTATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATTGCCTCCCTGTTTTTTTAGTAGTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCt                                                                                                                                                                                                                                   <  1:409742/269‑1 (MQ=255)                                              gCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGTGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCt                                                                                                                                                                                                                              <  1:4788/275‑1 (MQ=255)                                                  tCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAgg                                                                                                                                                                                                                          <  1:24648/275‑1 (MQ=255)                                                    tGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGtt                                                                                                                                                                                                                        <  1:111052/275‑1 (MQ=255)                                                                             tGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCttt                                                                                                                                                                                                >  2:54890/1‑274 (MQ=255)                                                                             tGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCttt                                                                                                                                                                                                >  1:386011/1‑274 (MQ=255)                                                                               aTAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTccc                                                                                                                                                                                                                                                                                >  1:262894/1‑193 (MQ=255)                                                                                   aTTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCa                                                                                                                                                                                                                                                                           <  2:262893/193‑1 (MQ=255)                                                                                                     tttCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATATATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGACCCTCGCGAATg                                                                                                                                                                        >  1:220044/1‑274 (MQ=255)                                                                                                         ccgatgaaccgggctctgaaagaactgaatgcgcaaacctggtttgctggcctgcgccgtgaacaatccggcagtcgtgccaatttaccggtgctggcaattcagagtggcgtatttaaagtgctgccgattatcgaattacagtgatatacacatgtcttgcttCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTAGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCAATCTGGAACCCCGCGAATGCtt                                                                                                                                                                     <  1:413433‑M1/109‑1 (MQ=255)                                                                                                                aaaGCGTTTTGAGGATTTTCCCCATTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTTTTTTTTGAGTATTAGCGATGATATCAGCGGGCTATTTGTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGa                                                                                                                                                            <  2:457749/274‑1 (MQ=255)                                                                                                                              aTTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCAcc                                                                                                                                              <  1:398203/275‑1 (MQ=255)                                                                                                                                   ccccAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACg                                                                                                                                         <  1:31858/275‑1 (MQ=255)                                                                                                                                   ccccAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACg                                                                                                                                         <  2:386010/275‑1 (MQ=255)                                                                                                                                   caacatgaaTGGCATTTATATTTAAAAGGTTCCAGTAATAGCCTCCCTGTGTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACg                                                                                                                                         <  1:350495/268‑1 (MQ=255)                                                                                                                                    cccAGTAATGGCATATATATTTAAAATGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGTGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGc                                                                                                                                        <  1:2004/275‑1 (MQ=255)                                                                                                                                             ggCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtata                                                                                                                               <  1:54890/275‑1 (MQ=255)                                                                                                                                                 tatatatTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGACATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAACACCCGAACCCATTCCATACCt                                                                                                                            >  2:350494/1‑274 (MQ=255)                                                                                                                                                        ttAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCAccc                                                                                                                                             >  2:319539/1‑250 (MQ=255)                                                                                                                                                            aaGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACg                                                                                                                                         <  1:319540/250‑1 (MQ=255)                                                                                                                                                                 tCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCCGACAGCCTCAAGCCCCCGAAGCCATCCTATACCTGATAATTCTTCCCgcgg                                                                                                           >  2:483116/1‑275 (MQ=255)                                                                                                                                                                     ttAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATAAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTGCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGtt                                                                                                       <  2:457483/275‑1 (MQ=255)                                                                                                                                                                          aGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TTCAAAGAAGAGACTAACATTCGAATTGCTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATAGACTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACCGCCTCAAGCACCCGACGCCATTCTCTACCTGGCAATTGTTCCCGCGGCCTTCACGt                                                                                                  >  2:86798/1‑275 (MQ=255)                                                                                                                                                                          aGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCtt                                                                                                                                                                     >  2:347031/1‑208 (MQ=255)                                                                                                                                                                            ccTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGt                                                                                                  >  1:373972/1‑273 (MQ=255)                                                                                                                                                                              tCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACg                                                                                                                                                                 <  1:347032/208‑1 (MQ=255)                                                                                                                                                                                       ttttAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCg                                                                                                                                            >  2:496270/1‑220 (MQ=255)                                                                                                                                                                                           aGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGc                                                                                                                                        <  1:496271/220‑1 (MQ=255)                                                                                                                                                                                                tatCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATGGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCg                                                                            <  1:83850/275‑1 (MQ=255)                                                                                                                                                                                                 atCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCg                                                                            >  2:120469/1‑274 (MQ=255)                                                                                                                                                                                                            cAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCTGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATaaaa                                                                  >  1:59250/1‑273 (MQ=255)                                                                                                                                                                                                                      ggcgtatttaaagtgctgccgattatcgactgggataaccgaactatttatcagtaCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAAtgctg                                                                                <  1:46318‑M1/193‑1 (MQ=255)                                                                                                                                                                                                                          tatttaaagtgctgccgattatcgactgggataaccgaactatttatcagtaCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCg                                                                            >  2:46318‑M1/53‑249 (MQ=255)                                                                                                                                                                                                                                ctgctCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACag                                            >  2:358335/1‑275 (MQ=255)                                                                                                                                                                                                                                                    aCAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGGCAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGc                        <  1:358336/275‑1 (MQ=255)                                                                                                                                                                                                                                                     cAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTTTCCATATGGAACCTCGCGAATGCTTAAAGCCAGACAGCCTCAAGCACCCGCCGCCATTCTATACCTGATAATTCTTCACGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCACAAAATCACAACGCCCCCATCATTTCTGACAGAGGCGTTCACTTTGTCTGGCa                       >  1:271911/1‑275 (MQ=255)                                                                                                                                                                                                                                                     cAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCa                       >  1:504896/1‑275 (MQ=255)                                                                                                                                                                                                                                                          atatACACATGTCTTGCCGCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGGACAGGTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAAATCTACCCGCGGCGTTCACGTTTAAAAGCAGGACTGCTGCTCGCAACATAAAAACGACCCCATCATTTCTGACACAGGCGTTTAAGTTGTCCGGCAatat                   >  2:242336/1‑274 (MQ=255)                                                                                                                                                                                                                                                                acaTGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt            >  1:429987/1‑275 (MQ=255)                                                                                                                                                                                                                                                                acaTGTCTTGCCTCCC‑TGCAAAGAAGAGAATAACATTCGAAGTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt            <  2:245222/275‑1 (MQ=255)                                                                                                                                                                                                                                                                acaTGTCTGGCCTCCC‑TGGAAAGAAGAGACTAACATTCGGATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTGCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt            <  1:86799/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  aTGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACAtt                                                                                                                                                                                                                                                          >  2:507806/1‑35 (MQ=255)                                                                                                                                                                                                                                                                    gTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTa                >  1:77764/1‑267 (MQ=255)                                                                                                                                                                                                                                                                    gTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCg         >  2:198520/1‑274 (MQ=255)                                                                                                                                                                                                                                                                    gTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCg         >  1:303116/1‑274 (MQ=255)                                                                                                                                                                                                                                                                    gTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTATTACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCg         >  1:415149/1‑274 (MQ=255)                                                                                                                                                                                                                                                                      cTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGaa                                                                                                                                                                                                                                                      <  1:507807/35‑1 (MQ=255)                                                                                                                                                                                                                                                                       ttGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTACTTTGTCCGGCAATATTTACCCTTCGTGTa     >  1:4380/1‑275 (MQ=255)                                                                                                                                                                                                                                                                        tGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt            <  2:77763/267‑1 (MQ=255)                                                                                                                                                                                                                                                                         tccTCCC‑TGCAAAGAAAGAACTAACATTCGTATTGTTTGGTGTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCGGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAc   <  2:220043/274‑1 (MQ=255)                                                                                                                                                                                                                                                                          ccTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCg                                                                                                                                                                                                           >  2:224295/1‑74 (MQ=255)                                                                                                                                                                                                                                                                          ccTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAcc  >  2:275911/1‑275 (MQ=255)                                                                                                                                                                                                                                                                              CC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTg                                                                                                                                                                                                       >  1:224296‑M1/1‑74 (MQ=255)                                                                                                                                                                                                                                                                              CC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCAccc                                                                                                                                             <  2:85972‑M1/132‑1 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                ATTTCGGCAAAAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCATTAATAGCCTCCCTGTTTTTTTAGTATTATCGATGATATCAGCGGGCTATTTTTCGATGCTGCTCATAAATATCGAATTACAGTGATATACACATGTCTTGCCTCCC‑TGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACC  >  NC_000913/2887053‑2887592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.