New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288917 =	NA (NA)	66 (0.960)	53/284	0.2	90.4%	intergenic (‑5/+146)	yejO/insH1	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
	?	NC_000913	3526447 =	7 (0.100)					intergenic (‑300/‑20)	nudE/yrfF	adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

CTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288775‑2289055                                                                                                                                               |                                                                                                                                           cTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTCTTGGCGGTCCCATAAACCAGCTTGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaag                                                                                                                                            <  2:164843/143‑1 (MQ=255) cTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGTTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaag                                                                                                                                            <  2:158182/143‑1 (MQ=255)  ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGCTGCCACTGCTATGGGTGAATGTcagg                                                                                                                                           >  2:575144/1‑143 (MQ=255)   tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga                                                                                                                                          >  2:31065/1‑143 (MQ=255)    ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCATTGCTATGGGTGAATATaaggaa                                                                                                                                         >  2:716424/1‑143 (MQ=255)    ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaa                                                                                                                                         <  2:1152232/143‑1 (MQ=255)     tataTGCTGTTCTCCGCCAGGATTGATTTTCGTACTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaag                                                                                                                                        <  2:222097/143‑1 (MQ=255)        atGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATGTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAGGGGTGAATATAAGGAAGGTg                                                                                                                                     >  2:334707/1‑143 (MQ=255)        atGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACCGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                     >  2:337390/1‑143 (MQ=255)         tGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGGATATAAGGAAGGTGc                                                                                                                                    >  2:296292/1‑143 (MQ=255)          gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCCGTGGACCACCGTCAACTGTCTCCCCATCCTCAACAGTTGATGCCCATAATATGGGGGGACTTACGGCAGGTGcc                                                                                                                                   >  1:241808/1‑142 (MQ=255)            tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGaa                                                                                                                                 <  2:628596/143‑1 (MQ=255)            tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGCTGATGCCAATGCTATGGGTGAATGTAAGGAAGGGCCGaa                                                                                                                                 >  1:113778/1‑143 (MQ=255)                 tcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGc                                                                                                                            <  2:1019270/143‑1 (MQ=255)                   cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:497960/143‑1 (MQ=255)                   cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:980280/143‑1 (MQ=255)                       aGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTCTCCAGGACAACACCATCACCTGTCTCACCATACTCATCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                      <  2:734765/143‑1 (MQ=255)                        ggATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                     <  2:765415/143‑1 (MQ=255)                           ttgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCGATGGGGGAATATAGGGAAGGTGCGAATAAGCCGGGAAAtgc                                                                                                                  >  2:949625/1‑141 (MQ=255)                                tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCACTGCCATGGGTGAATATAAGCAAGGTGCGAATAAGCGCGGaaacactccac                                                                                                             >  1:472702/1‑135 (MQ=255)                                  tCGTATTATGCGCGGGTCCATAAACCCGCTGGATATCTTTCTCCAGGACAACACCATCAACTGTCTCACCATACTCGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                           <  1:212645/143‑1 (MQ=38)                                    gtcttattGGCGGTCCCCTAAGCCGGCTGGATACCTTTTTCCGCGACAACACCATCAACTGTCTCATCATTTTCAACTGTTGCTGCCACCGCTATGAGTGAATCGTAGGAAGGTGCGATTAAGCGGCGAGATTCTTCTCGGCt                                                                                                         <  1:925496/140‑1 (MQ=255)                                     tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATCCTATGGGTGCACATAAGCAAGGTGCGAATAAGCGACGAAATTCTTCTCGGCTg                                                                                                        >  1:957360/1‑143 (MQ=255)                                     tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACAATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGCATAAGCGGCGAAATTCTTATCGGCTg                                                                                                        >  1:107651/1‑143 (MQ=255)                                         attGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                                                                    <  2:948878/143‑1 (MQ=255)                                          ttGGCGGTCCCATCAAGCAGCTGGATATCTTTTTCCAGGACAACAGCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATCAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                   <  1:85299/143‑1 (MQ=255)                                             gCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAACGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCAGtc                                                                                                >  1:602294/1‑143 (MQ=255)                                                 tCCCATAAACGAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGAGGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                            <  1:548654/143‑1 (MQ=255)                                                   ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATACGGAAGGTGAGATAAGGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                          >  1:847838/1‑143 (MQ=39)                                                     aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGCAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattacata                                                                                        >  1:646299/1‑142 (MQ=255)                                                       aaaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                      <  2:1109494/143‑1 (MQ=255)                                                           cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                                                                  >  2:1045449/1‑143 (MQ=255)                                                              cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                               >  1:1126855/1‑143 (MQ=255)                                                                 gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                            <  1:334707/143‑1 (MQ=255)                                                                 gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                            <  1:337390/143‑1 (MQ=255)                                                                  atatCTTTTTCTAGTACAAGACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGTTGAATATAAGGAAGGTGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  1:716752/143‑1 (MQ=25)                                                                  atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  2:195241/143‑1 (MQ=255)                                                                    atCTTTTTCTAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                         <  2:923577/143‑1 (MQ=255)                                                                     tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGAGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                                                                        >  1:973266/1‑143 (MQ=255)                                                                       tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                      >  2:175550/1‑143 (MQ=255)                                                                       tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTCGAGCCGa                                                                      >  1:984540/1‑143 (MQ=255)                                                                        ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGGGCCGAt                                                                     >  2:914730/1‑143 (MQ=255)                                                                        ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                     >  1:168054/1‑143 (MQ=255)                                                                            gcAGGACAGCTCCTTCCACTGTCTCACCATACTCAACAGTTCATGCCAATGCTATGGGTGAATATAAGTAAGGTGCGAATAAGCGGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                                 <  1:377267/142‑1 (MQ=21)                                                                            ccAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                                 <  2:492628/143‑1 (MQ=255)                                                                            ccAGGACAACACCATCAACCGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                                 >  2:765527/1‑143 (MQ=255)                                                                                  caacaCCATCAACTGTCTCACCATACTCAACCGTTGATGCCAATGCTATGGGCGAATCTAAGGAAGGTGCGAATAAGCGGGGAGATTCTTCTCGGCTGACTCAGTCATTTCATTTCCTCATGTTTGAGCCGGTTTTTTCTccc                                                           >  1:457274/1‑143 (MQ=21)                                                                                  caacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATCTAAGGAAAGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATATCATTTCCTCATGTTCGCGCCGATCTTCTCTccc                                                           >  1:790216/1‑143 (MQ=25)                                                                                     cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTAATTTCTTCATGTTTGAGCCGATTTTTTCTcccttg                                                        >  2:1152863/1‑140 (MQ=255)                                                                                     cacCAACAGCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGCTCGACTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTAATGTCACTTATTCATGTTTAAGCCGATTTTTTCTCCCGtc                                                        >  1:1121134/1‑142 (MQ=21)                                                                                      acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                       >  2:226138/1‑143 (MQ=255)                                                                                        cATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCCTACAt                                                     >  2:213352/1‑143 (MQ=255)                                                                                         aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATCAGGACTGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGTGCCCAttttcgcaccgcgaacag                                                    >  1:131029/1‑129 (MQ=21)                                                                                                 tctcACCATACTCAACAGTTAATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGCTAGAGCCGACATTTTATCACATAAATGCCATGGAt                                            >  1:49529/1‑143 (MQ=18)                                                                                                   tcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                          <  2:902229/143‑1 (MQ=255)                                                                                                     aCCATCCTAAACAGTTGATGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        <  2:338717/143‑1 (MQ=255)                                                                                                     aCCATACTCCACAGTTGAGTCCAATGCTATCGGTGAATATAAGCAAGCTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        <  2:87101/143‑1 (MQ=17)                                                                                                     aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        >  1:287992/1‑143 (MQ=255)                                                                                                     aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        >  1:617243/1‑143 (MQ=255)                                                                                                     aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCAGCTGACACAATCAATTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        >  1:720134/1‑143 (MQ=255)                                                                                                       cATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCt                                      >  1:489797/1‑143 (MQ=255)                                                                                                        aTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTa                                     >  2:721596/1‑143 (MQ=255)                                                                                                           cTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                  <  1:368497/143‑1 (MQ=255)                                                                                                            tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAGTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTTGACTGTATATGCCTTGAATCTACCTATTTa                                 >  1:749971/1‑143 (MQ=17)                                                                                                            tCAACAGTTGATGCCAATGCTATGGGTGAATAAAAGACAAGCGCAAATTTTCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCGGATTTTTTCTCGCGTAAATGCTTTGAATCAGTGTAtttg                                 >  2:824218/1‑142 (MQ=17)                                                                                                              aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGAGACGATTTTTTCTCCCGTACACGCCTTGACTCAGCCTATGTAGa                               >  1:910887/1‑143 (MQ=17)                                                                                                              aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTAATGTTTGAGCCGATTTTTTCTACCGTAGATGCCTTGGATCGGCCTATCTAgc                               >  1:67868/1‑142 (MQ=17)                                                                                                                taGTTGATTCCATGGCTATGGTTTAATAGAAGGAAGGGGCGAATAAGCGGGTAAATTCTTCTCGGCTGTCTCAGTCTTTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcc                             <  1:345438/142‑1 (MQ=11)                                                                                                                     gATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc                        <  1:494357/143‑1 (MQ=255)                                                                                                                        gCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                     >  1:251141/1‑143 (MQ=255)                                                                                                                          cAATGCTATGGGTGAATATAAGGAAGGTGCGAATCAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAATTCATTACTTCATATTTGAGCCGATCTTTTCTCCCGTAACTCCCTTGCATCCACCTCTCTAGCCCCTttcttccc                   >  1:873360/1‑141 (MQ=14)                                                                                                                          cAACGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGCAACTCTTCTCGGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTCACTGCCCTTACTCAGCCTCTCTATACCCTCTCCTCGc                   >  1:269456/1‑143 (MQ=14)                                                                                                                           aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc                  <  2:467108/143‑1 (MQ=255)                                                                                                                           aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc                  >  1:962501/1‑143 (MQ=255)                                                                                                                               cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCAAttt              >  1:618064/1‑143 (MQ=255)                                                                                                                                tATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATACGCCTATTTAGACCGTTTCTTCGCCATTTa             >  2:748600/1‑143 (MQ=255)                                                                                                                                  tgtgTGAATATAAGGCAGGTGCGAATAAGCGGGGACATTCTTCTCGCCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg           <  1:842183/140‑1 (MQ=255)                                                                                                                                      tGAATATAAGGAAGGTGCGAATAAGCGGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGACTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt       <  1:948166/143‑1 (MQ=21)                                                                                                                                       gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGCATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGtt      >  2:549865/1‑143 (MQ=18)                                                                                                                                          tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc   <  2:42349/143‑1 (MQ=31)                                                                                                                                          tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGCCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAATCAGCCTCTTGAGACCGTTTCTTCGCCCCTTCAGGGGTtctc   >  1:993768/1‑143 (MQ=11)                                                                                                                                           ataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc  <  2:1122165/143‑1 (MQ=11)                                                                                                                                               |                                                                                                                                           CTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288775‑2289055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.