Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	82 [0]	[0] 83	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	78 (1.200)	65/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/1978364‑1978638                                                                                                                                           |                                                                                                                                         tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                      >  2:1158851‑M1/1‑139 (MQ=255)  cTTTATTCTTATCTAAGATTTTTCTTAAAGCGACGCCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGTTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                     <  1:667770‑M1/143‑6 (MQ=255)   tttACACTTATTTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                    <  1:702534‑M1/143‑7 (MQ=255)   tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTGCACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTGCTTAACATAAATGtataag                                                                                                                                    >  2:691027‑M1/1‑137 (MQ=255)    ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACAACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATAtataaat                                                                                                                                   >  1:657726‑M1/1‑136 (MQ=255)             tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                          <  1:873776‑M1/143‑17 (MQ=255)                acgacgtctcctgaagcGACGCAACGGTACCCGTCACCACACGCACATACAACGGAGGGGGGCTGCGATTTTTAATAATGCGTGATGTACATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                       <  2:211917‑M1/135‑20 (MQ=255)                 aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                      >  2:460591‑M1/1‑123 (MQ=255)                  gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                     <  2:139832‑M1/143‑22 (MQ=255)                   aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGAAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAACATAGATGtataagtcatacttttgtcttc                                                                                                                    >  2:140212‑M1/1‑121 (MQ=255)                    tttttCCTAAATCGACGCAACTGTACTCGTCACTACCCGCACAGAGAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                   <  2:101131‑M1/143‑24 (MQ=255)                     ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCCCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATCAATGtataagtcatccttttgttttggg                                                                                                                  >  1:760662‑M1/1‑119 (MQ=255)                     ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGcctacgtgatacttgtgcgttgag                                                                                                                  >  2:317181‑M1/1‑119 (MQ=255)                          cTAAATCGACGCAACTGTACTCGTCACTACACGCCCATACATCGGGGGGGGGCTGCGATTTTCAATAATGCATGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttatgggtgtat                                                                                                             >  1:366718‑M1/1‑114 (MQ=255)                           tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatt                                                                                                            >  2:424884‑M1/1‑113 (MQ=255)                              aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactatagttttgggtgtatttca                                                                                                         >  1:750155‑M1/1‑110 (MQ=255)                               tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                        <  2:406440‑M1/143‑35 (MQ=255)                                    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                   >  2:1189847‑M1/1‑104 (MQ=255)                                          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                             <  1:656395‑M1/143‑46 (MQ=255)                                          gTACTCGTCACTACACGCACATACAAAGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                             >  2:559799‑M1/1‑98 (MQ=255)                                              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                         >  2:903670‑M1/1‑94 (MQ=255)                                              tCGTCACCACACGCACATACAACGGAGGGGGGCTGCGATTTTCGAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatccttttgtttttggtgtatttcaatctgttaaaaaggtt                                                                                         >  2:102901‑M1/1‑94 (MQ=255)                                                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                       <  2:862010‑M1/143‑52 (MQ=255)                                                gTCACTACACGCACATACAACGGAGGGGGGATGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacctttgttttgggtgtatttcaatctgttaacaagttttt                                                                                       >  2:322365‑M1/1‑92 (MQ=255)                                                gTCACTACACGCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                       <  1:1058532‑M1/143‑52 (MQ=255)                                                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaacgtttttc                                                                                      >  1:826626‑M1/1‑91 (MQ=255)                                                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                     >  2:329018‑M1/1‑90 (MQ=255)                                                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                   <  1:1024662‑M1/143‑56 (MQ=255)                                                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctt                                                                                  >  1:234724‑M1/1‑87 (MQ=255)                                                       gacggagatacaactGAGGGGGGCTGCGAGTTTCAATAATGCGCGATGCAGATCACACAAAACACTCATTTCCTTTACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                <  1:452674‑M1/136‑59 (MQ=255)                                                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                               >  2:1089522‑M1/1‑84 (MQ=255)                                                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATACAAGtttggcgaataccgttggtttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                             >  2:1192847‑M1/1‑82 (MQ=255)                                                          gCACATACAACGGAGGGGGGCTGCGATTTTCAAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                             <  1:1021123‑M1/143‑62 (MQ=255)                                                              aTACAACGGAGGGGTGCTGCGATTTTCAATAATGCGTGATGCAGATTACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                         <  1:542649‑M1/143‑66 (MQ=255)                                                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttttcgctacgctagcaggcaa                                                                     >  1:1141289‑M1/1‑74 (MQ=255)                                                                     gcaggGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                  <  2:692581‑M1/141‑73 (MQ=255)                                                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTGAATTACATAACATATATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                <  2:223473‑M1/143‑75 (MQ=255)                                                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                             <  2:972967‑M1/143‑78 (MQ=255)                                                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                             <  2:798037‑M1/143‑78 (MQ=255)                                                                          ggggCTCCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattccaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                             <  2:1091395‑M1/143‑78 (MQ=255)                                                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                            >  2:1151130‑M1/1‑65 (MQ=255)                                                                            ggCTGCGCTTTTCAATAATGAGTGATGCAGATCATACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                           <  1:831541‑M1/143‑80 (MQ=255)                                                                             gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacatcatacttttgttttgggtgtctatcactctgttaaaaagtttttctctacgctaccaagcaaaaatgatacag                                                          >  1:237647‑M1/1‑63 (MQ=255)                                                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                         >  1:195906‑M1/1‑62 (MQ=255)                                                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaggcagacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                         >  1:582434‑M1/1‑62 (MQ=255)                                                                               tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagacatacttttgttttgggtgtatttcaatctggtaaaaagtgtatcgctacgcttgccagcaaaaatgaaacagga                                                        >  2:654727‑M1/1‑61 (MQ=255)                                                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTGAATTACTTAACATAAATGtataagtcatactgttgttttgggtgtatttcaatctgttaaaaagtttttcgctacggtagcaagcaaaaatgaaacaggaataa                                                    <  1:761097‑M1/143‑87 (MQ=255)                                                                                     tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgatagcaagcaaaaatgaaacaggaataatc                                                  >  2:789061‑M1/1‑55 (MQ=255)                                                                                     tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataattttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataagc                                                  >  1:601718‑M1/1‑55 (MQ=255)                                                                                     tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTGAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                  <  2:227264‑M1/143‑89 (MQ=255)                                                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                 >  1:299909‑M1/1‑54 (MQ=255)                                                                                          ttattgcgtGATGCAGATCACACAAAACTCTCTATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtgtttcgctacgctagcaagcaaaaatgaaacaggaatactcgaaat                                             <  1:230318‑M1/139‑94 (MQ=255)                                                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggcataatcgaaatggg                                          >  1:721019‑M1/1‑47 (MQ=255)                                                                                             aggcgTGATGCAGATTACAGAAAACACTCAGTTGCGTAACATAAATGtataagtcatgcgtttttttggggtgtatttcaatctgttaaaaagtttttcgcgacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                          <  1:1042242‑M1/141‑97 (MQ=255)                                                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAACCTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                        <  1:890326‑M1/143‑99 (MQ=255)                                                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                     >  2:68690‑M1/1‑42 (MQ=255)                                                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                     >  2:763567‑M1/1‑42 (MQ=255)                                                                                                     tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg                                  >  1:780578‑M1/1‑39 (MQ=255)                                                                                                      gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaaagggatgttgcgc                                 >  2:858051‑M1/1‑38 (MQ=255)                                                                                                       cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                <  2:79842‑M1/143‑107 (MQ=255)                                                                                                        aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcac                               >  2:360608‑M1/1‑36 (MQ=255)                                                                                                          aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                             <  1:383882‑M1/143‑110 (MQ=255)                                                                                                          aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                             <  2:489502‑M1/143‑110 (MQ=255)                                                                                                            cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttacaaagtttttcgctacgctagcaagcaaaaatgaatcaggaataaccgaaatgagatgttgcgcacagtc                           >  2:321586‑M1/1‑32 (MQ=255)                                                                                                             acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttatcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcg                          >  2:601443‑M1/1‑31 (MQ=255)                                                                                                               acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                        >  1:758861‑M1/1‑29 (MQ=255)                                                                                                               acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                        >  2:658462‑M1/1‑29 (MQ=255)                                                                                                               acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                        >  2:1202912‑M1/1‑29 (MQ=255)                                                                                                                caAAATACGCTATTTATTTACATAACTGtatgagacatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                       <  1:407451‑M1/143‑116 (MQ=255)                                                                                                                caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                       <  1:1192847‑M1/143‑116 (MQ=255)                                                                                                                   aacccttgattacttaaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                    <  1:1138517‑M1/135‑119 (MQ=255)                                                                                                                       cTCAATTACTTAAGATAGATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                <  1:1098590‑M1/143‑123 (MQ=255)                                                                                                                          aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatctgttaaaaagtttttagctacgctgacaagcacaaataaaacaggaataatagacataggatgttccgcacagtcaaactaaataccga             >  1:256569‑M1/1‑18 (MQ=255)                                                                                                                                 tcacaTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa      <  1:1025732‑M1/141‑133 (MQ=255)                                                                                                                                  aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat     >  1:329882‑M1/1‑10 (MQ=255)                                                                                                                                  aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat     >  2:801153‑M1/1‑10 (MQ=255)                                                                                                                                   aCATAAGTGtataggtcatacttttgttttgggtgtatttcaagctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc    <  1:186259‑M1/143‑135 (MQ=255)                                                                                                                                   aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc    >  2:186999‑M1/1‑9 (MQ=255)                                                                                                                                     aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaatcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacggtcaaaataactcaccgtaaataatcat  >  1:989255‑M1/1‑7 (MQ=255)                                                                                                                                     aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactgaccgtaaataatcct  >  2:1065001‑M1/1‑7 (MQ=255)                                                                                                                                     aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat  >  1:936596‑M1/1‑7 (MQ=255)                                                                                                                                     aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat  >  2:1050709‑M1/1‑7 (MQ=255)                                                                                                                                           |                                                                                                                                         TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/1978364‑1978638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑