Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	82 [0]	[0] 83	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	78 (1.200)	65/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979140‑1979421                                                                                                                                            |                                                                                                                                               tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                             >  2:1158851‑M2/140‑143 (MQ=255)  ctttattcttatctaagatttttcttaaagcgacgccactgtactcgtcactacacgcacatacaacggaggggggctgcgtttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  1:667770‑M2/5‑1 (MQ=255)   tttacacttatttaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                           <  1:702534‑M2/6‑1 (MQ=255)   tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactgcacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattgcttaacataaatgTATAAg                                                                                                                                           >  2:691027‑M2/138‑143 (MQ=255)    ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcacaacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaataTataaat                                                                                                                                          >  1:657726‑M2/137‑141 (MQ=255)             tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacagacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                 <  1:873776‑M2/16‑1 (MQ=255)                acgacgtctcctgaagcgacgcaacggtacccgtcaccacacgcacatacaacggaggggggctgcgatttttaataatgcgtgatgtacatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                              <  2:211917‑M2/19‑1 (MQ=255)                 agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                             >  2:460591‑M2/124‑143 (MQ=255)                  gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                                                            <  2:139832‑M2/21‑1 (MQ=255)                   atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgaaggggggctgcgattttcaataatgcgtgatgcagatcacccaaaacactcaattacttaacatagatgTATAAGTCATActtttgtcttc                                                                                                                           >  2:140212‑M2/122‑142 (MQ=255)                    tttttcctaaatcgacgcaactgtactcgtcactacccgcacagagaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                          <  2:101131‑M2/23‑1 (MQ=255)                     ttttcctaaatcgacgcaactgtactcgtcactacacgcccatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactccattacttaacatcaatgTATAAGTCATCCTTTTGTTTTggg                                                                                                                         >  1:760662‑M2/120‑143 (MQ=255)                     ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgCCTACgtgatacttgtgcgttgag                                                                                                                         >  2:317181‑M2/120‑136 (MQ=255)                          ctaaatcgacgcaactgtactcgtcactacacgcccatacatcgggggggggctgcgattttcaataatgcatgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTATGGGTGTAt                                                                                                                    >  1:366718‑M2/115‑143 (MQ=255)                           taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTGTGTTTTGGGTGTAtt                                                                                                                   >  2:424884‑M2/114‑143 (MQ=255)                              atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTATAGTTTTGGGTGTATTTCa                                                                                                                >  1:750155‑M2/111‑143 (MQ=255)                               tcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                                                               <  2:406440‑M2/34‑1 (MQ=255)                                    gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                          >  2:1189847‑M2/105‑143 (MQ=255)                                          gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                    <  1:656395‑M2/45‑1 (MQ=255)                                          gtactcgtcactacacgcacatacaaaggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                    >  2:559799‑M2/99‑143 (MQ=255)                                              tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                                >  2:903670‑M2/95‑143 (MQ=255)                                              tcgtcaccacacgcacatacaacggaggggggctgcgattttcgagaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATCCTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGgtt                                                                                                >  2:102901‑M2/95‑143 (MQ=255)                                                gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  2:862010‑M2/51‑1 (MQ=255)                                                gtcactacacgcacatacaacggaggggggatgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACCTTTGTTTTGGGTGTATTTCAATCTGTTAACAAGttttt                                                                                              >  2:322365‑M2/93‑143 (MQ=255)                                                gtcactacacgcacagacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  1:1058532‑M2/51‑1 (MQ=255)                                                 tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaacacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTTTTc                                                                                             >  1:826626‑M2/92‑143 (MQ=255)                                                  cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                            >  2:329018‑M2/91‑143 (MQ=255)                                                    ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                          <  1:1024662‑M2/55‑1 (MQ=255)                                                     tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTtcgctt                                                                                         >  1:234724‑M2/88‑142 (MQ=255)                                                       gacggagatacaactgaggggggctgcgagtttcaataatgcgcgatgcagatcacacaaaacactcatttcctttacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                       <  1:452674‑M2/58‑1 (MQ=255)                                                        acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                      >  2:1089522‑M2/85‑143 (MQ=255)                                                          gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatacaagTTTGGCGAATACCGTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                    >  2:1192847‑M2/83‑143 (MQ=255)                                                          gcacatacaacggaggggggctgcgattttcaagaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                    <  1:1021123‑M2/61‑1 (MQ=255)                                                              atacaacggaggggtgctgcgattttcaataatgcgtgatgcagattacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                <  1:542649‑M2/65‑1 (MQ=255)                                                                  aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAgcaggcaa                                                                            >  1:1141289‑M2/75‑143 (MQ=255)                                                                     gcaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                         <  2:692581‑M2/72‑1 (MQ=255)                                                                       aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactgaattacataacatatatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                       <  2:223473‑M2/74‑1 (MQ=255)                                                                          ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                    <  2:972967‑M2/77‑1 (MQ=255)                                                                          ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                    <  2:798037‑M2/77‑1 (MQ=255)                                                                          ggggctccgattttcaataatgcgtgatgcagatcacacaaaaccctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTCCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                    <  2:1091395‑M2/77‑1 (MQ=255)                                                                           gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                   >  2:1151130‑M2/66‑143 (MQ=255)                                                                            ggctgcgcttttcaataatgagtgatgcagatcatacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                                  <  1:831541‑M2/79‑1 (MQ=255)                                                                             gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACATCATACTTTTGTTTTGGGTGTCTATCACTCTGTTAAAAAGTTTTTCTCTACGCTACCAAGCAAAAATGATACAg                                                                 >  1:237647‑M2/64‑143 (MQ=255)                                                                              ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                                >  1:195906‑M2/63‑143 (MQ=255)                                                                              ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGGCAGACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                                >  1:582434‑M2/63‑143 (MQ=255)                                                                               tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGACATACTTTTGTTTTGGGTGTATTTCAATCTGGTAAAAAGTGTATCGCTACGCTTGCCAGCAAAAATGAAACAGGa                                                               >  2:654727‑M2/62‑143 (MQ=255)                                                                                   attttcaataatgcgtgatgcagatcacacaaaacactgaattacttaacataaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGGTAGCAAGCAAAAATGAAACAGGaataa                                                           <  1:761097‑M2/86‑1 (MQ=255)                                                                                     tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAGCAAAAATGAAACAGGAATAATc                                                         >  2:789061‑M2/56‑143 (MQ=255)                                                                                     tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAATTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAggaataagc                                                         >  1:601718‑M2/56‑141 (MQ=255)                                                                                     tttcaataatgcgtgatgcagatcacacaaaacactcaattactgaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                         <  2:227264‑M2/88‑1 (MQ=255)                                                                                      ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                        >  1:299909‑M2/55‑143 (MQ=255)                                                                                          ttattgcgtgatgcagatcacacaaaactctctattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATACTCGAAAt                                                    <  1:230318‑M2/93‑1 (MQ=255)                                                                                             atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGCATAATCGAAATggg                                                 >  1:721019‑M2/48‑143 (MQ=255)                                                                                             aggcgtgatgcagattacagaaaacactcagttgcgtaacataaatgTATAAGTCATGCGTTTTTTTGGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCGACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                 <  1:1042242‑M2/96‑1 (MQ=255)                                                                                               gcgtgatgcagatcacacaaaacactcaattacttaacctaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                               <  1:890326‑M2/98‑1 (MQ=255)                                                                                                  tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                            >  2:763567‑M2/43‑143 (MQ=255)                                                                                                  tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                            >  2:68690‑M2/43‑143 (MQ=255)                                                                                                     tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                         >  1:780578‑M2/40‑143 (MQ=255)                                                                                                      gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAAGGGATGTTgcgc                                        >  2:858051‑M2/39‑143 (MQ=255)                                                                                                       cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                       <  2:79842‑M2/106‑1 (MQ=255)                                                                                                        agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                      >  2:360608‑M2/37‑143 (MQ=255)                                                                                                          atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                    <  1:383882‑M2/109‑1 (MQ=255)                                                                                                          atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                    <  2:489502‑M2/109‑1 (MQ=255)                                                                                                            cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTACAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAATCAGGAATAACCGAAATGAGATGTTGCGCACAGTc                                  >  2:321586‑M2/33‑143 (MQ=255)                                                                                                             acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTATCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGtcg                                 >  2:601443‑M2/32‑142 (MQ=255)                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  2:1202912‑M2/30‑143 (MQ=255)                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  1:758861‑M2/30‑143 (MQ=255)                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  2:658462‑M2/30‑143 (MQ=255)                                                                                                                caaaatacgctatttatttacataactgTATGAGACATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                              <  1:407451‑M2/115‑1 (MQ=255)                                                                                                                caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                              <  1:1192847‑M2/115‑1 (MQ=255)                                                                                                                   aacccttgattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                           <  1:1138517‑M2/118‑1 (MQ=255)                                                                                                                       ctcaattacttaagatagatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                       <  1:1098590‑M2/122‑1 (MQ=255)                                                                                                                          aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTAGCTACGCTGACAAGCACAAATAAAACAGGAATAATAGACATAGGATGTTCCGCACAGtcaaactaaataccga                    >  1:256569‑M2/19‑136 (MQ=255)                                                                                                                                 tcacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa             <  1:1025732‑M2/132‑1 (MQ=255)                                                                                                                                  aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat            >  1:329882‑M2/11‑143 (MQ=255)                                                                                                                                  aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat            >  2:801153‑M2/11‑143 (MQ=255)                                                                                                                                   acataagtgTATAGGTCATACTTTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc           <  1:186259‑M2/134‑1 (MQ=255)                                                                                                                                   acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc           >  2:186999‑M2/10‑143 (MQ=255)                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAATCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACGGTCAAAATAACTCACCGTAAATAatcat         >  1:989255‑M2/8‑143 (MQ=255)                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTGACCGTAAAtaatcct         >  2:1065001‑M2/8‑141 (MQ=255)                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat         >  1:936596‑M2/8‑143 (MQ=255)                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat         >  2:1050709‑M2/8‑143 (MQ=255)                                                                                                                                            tataCGTCATACTTTTGTTTTGGCTGTATTTCAATCTGTTAAAAAGTTTTTCGCCACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  <  2:1182322/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                               CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979140‑1979421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑