Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,023,805 (CTTTA)2→1 intergenic (+127/‑159) fliR → / → rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2023796 2023800 5 51 [0] [0] 53 fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2023801 =0 (0.000)47 (1.230) 38/266 0.1 100% intergenic (+123/‑167) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 = 2023795 0 (0.000)intergenic (+117/‑173) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

CGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2023943‑2023801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAA  <  NC_000913/2023795‑2023656
                                                                                                                                                                                                                                                                                           
CGATAATTCCCCTGATCTGAAGATTGCATCATGACTAAACGGAACAACATGGGTCACCTAAGGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTAACCCATAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA                                                                                                                                              <  1:320081/143‑1
CGATAATGCCCCTTACCTGAATATTCCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA                                                                                                                                              <  2:526210/143‑1
 GATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAAT                                                                                                                                             >  2:34623/1‑143
       TCCCCTTAGCTGTCTAGTTCATCTGGGCTCGTCGTAACACCATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCG                                                                                                                                       <  1:657010/143‑1
       TCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAGTGTTGCG                                                                                                                                       >  2:291974/1‑143
           CTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATAT                                                                                                                                   <  1:318621/143‑1
               CCTGCATACTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGA                                                                                                                               <  1:679722/143‑1
                CTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAG                                                                                                                              >  1:189522/1‑143
                CTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAG                                                                                                                              >  2:43477/1‑143
                         cCATAATAACTAGGCGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAA                                                                                                                     <  2:59220/142‑1
                           ATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAA                                                                                                                   <  2:520258/143‑1
                               TGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAA                                                                                                               <  1:116756/143‑1
                                   TAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGAGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAACTTAAAACAAATATT                                                                                                           >  1:25052/1‑143
                                     AACGGAACAACATGGGTCACCTAATGCGCCATTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAATTGTTGTATAATTTGCCTGGAATTGTCTTACAGTAAATGTTGCGATATGTGAGTGAGCTTAAATCAATTATTTC                                                                                                         >  2:47168/1‑143
                                      ACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCAGTAAAGTGTTGTATAATTGGCCTGGAATTGTCGTAAAGTAAATGTTGCGATATGCGGGTGAGCTTAAAACAAATATTTCG                                                                                                        >  1:368211/1‑143
                                            CAACCTGGGTCGCCTAATGCGCCACGCTCGCGATTTTTCAGGCGGACGTACTATCCCGTAAAGTGGTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAG                                                                                                  <  1:212673/143‑1
                                                    GTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCC                                                                                          >  2:218845/1‑143
                                                           AATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGGCTTGTATAGTTTGCCTGGAAATGTACTAAAGTAAATGTTGCGATATGTGAGTGAGCTCAAGACAAATATTTGGCAGCAGGAGTAGCGTGGccga                                                                                   >  1:647487/1‑139
                                                               cccccCTCTCGCGTTTCTTCAGGCGGCCTTACTACCCCGGAAAGTGTTGTATAATTTGCCTGGAATTGTCGTAAACTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAAGATTTCGCTGCAGGAGTATCCTGGAAGATGTT                                                                               <  2:302571/138‑1
                                                               CGCCACTCTCGCCATTCTACAAGCTGACTTACTACCCCCTAAAGTGTTGTATAATTTGCCTGGAACTGTCTTAAATGCAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTT                                                                               <  2:301936/143‑1
                                                                GCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTC                                                                              >  1:188143/1‑143
                                                                   ACTCTCGCGTTTTTTCTGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTA                                                                           <  1:629482/143‑1
                                                                       TCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTc                                                                       >  1:68553/1‑142
                                                                       TCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGAAGCATGGAAGATGTTCGTAGGTA                                                                       >  1:41374/1‑143
                                                                       TCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGAAGTATACTGGAAGATGTTGGTAGGTA                                                                       >  1:8610/1‑143
                                                                       TCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTCAACTTAAAACAAATATTTCGCTGCAGGAGTATCGTGGAAGATGTTCGTAGGTA                                                                       >  2:406574/1‑143
                                                                               TTTCATGCGGACTCACTATCTCGTAAAGTGTTGTATAATTTGCCTGTAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTT                                                               <  1:426368/143‑1
                                                                               TTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTT                                                               >  1:240576/1‑143
                                                                               TTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATAATTTTT                                                               >  1:298001/1‑143
                                                                                gTCAGGCGGACGTACTAGCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTC                                                              <  2:252464/142‑1
                                                                                 TCATGCGGTCTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGATGTGTCTTAAAGTAAATGTTGCGATATGTGTGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCG                                                             <  1:35689/143‑1
                                                                                      CGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAATGTAGTGGGTATTATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAA                                                        <  2:330259/143‑1
                                                                                           TTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTT                                                   <  2:51257/143‑1
                                                                                            aACTATACGGGAAAGGGATGTATAATTGGCCGGGAATTGTCTTAAAGGAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTA                                                  <  2:189522/142‑1
                                                                                             ACTATCCCGTAAAGTGTTGTATACTCTGCCTCGCAGTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAG                                                 <  2:297565/143‑1
                                                                                                   CCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAAC                                           >  2:616993/1‑143
                                                                                                    CGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACA                                          >  2:234923/1‑143
                                                                                                     GTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACAT                                         <  1:34623/143‑1
                                                                                                      TAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAAGATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATTACATG                                        <  1:595158/143‑1
                                                                                                          gttTTGTATTATTTGCCTGGAATTGTCTTAAAGTTAATGTTGCGAGATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACACGATAA                                    <  1:129031/140‑1
                                                                                                              TGTATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGT                                <  2:548187/143‑1
                                                                                                                TATAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTA                              >  2:459031/1‑143
                                                                                                                  TAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGGTAAACGTTACG                            >  1:213929/1‑143
                                                                                                                  TAATTTGCCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACG                            <  2:476448/143‑1
                                                                                                                         CCTGGAATTGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTGAGTGAAAGATACCGCGGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTAT                     <  2:521000/143‑1
                                                                                                                                 TGTCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAATAAATTTTTCGCCACAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGG             <  2:520830/143‑1
                                                                                                                                   TCTTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGACA           >  1:276083/1‑143
                                                                                                                                     TTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAACTATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACCAGATAAACCTTATAGCATGATAATAATGACAAT         >  1:614359/1‑143
                                                                                                                                     TTAAAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAAT         >  2:117750/1‑143
                                                                                                                                        AAGTAAATGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATGAATGTCAATTta      >  1:678298/1‑141
                                                                                                                                        AAGCAAATTTTGCGATATGTGAGTGAGCGTAAAACAAATATTTCGATGCAGGAGCATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCA      <  2:273532/143‑1
                                                                                                                                         AGTAAATGTTGCGATATGTAAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCAC     <  2:253214/143‑1
                                                                                                                                            AAATGTCGCGATAGGGGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAA  <  2:324031/143‑1
                                                                                                                                                                                                                                                                                           
CGATAATTCCCCTTACCTGAATATTTCATCATGACTAAACGGAACAACATGGGTCACCTAATGCGCCACTCTCGCGATTTTTCAGGCGGACTTACTATCCCGTAAAGTGTTGTATAATTTGCCTGGAATTGTCTTAAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2023943‑2023801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagtaaaTGTTGCGATATGTGAGTGAGCTTAAAACAAATATTTCGCTGCAGGAGTATCCTGGAAGATGTTCGTAGGTATTATTTTTCGGATAATCCTTAGGATAACATGATAAACGTTACGGAATTATATTAATGGCAATTCACTAA  <  NC_000913/2023795‑2023656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.