| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,023,805 | (CTTTA)2→1 | intergenic (+127/‑159) | fliR → / → rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2023796 | 2023800 | 5 | 51 [0] | [0] 53 | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2023801 = | 0 (0.000) | 47 (1.230) | 38/266 | 0.1 | 100% | intergenic (+123/‑167) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| ? | NC_000913 | = 2023795 | 0 (0.000) | intergenic (+117/‑173) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis | |||||
TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA > NC_000913/2023656‑2023937 | ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCCCCTATCGCGACAttt < 2:324031‑M2/143‑4 (MQ=255) gTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTTACATATCGCAACAtttact < 2:253214‑M2/143‑7 (MQ=255) taaattGACATTCATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactt > 1:678298‑M2/3‑136 (MQ=255) tGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATGCTCCTGCATCGAAATATTTGTTTTACGCTCACTCACATATCGCAAAAtttgctt < 2:273532‑M2/143‑8 (MQ=255) aTTGTCATTATTATCATGCTATAAGGTTTATCTGGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATAGTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa > 1:614359‑M2/1‑133 (MQ=255) aTTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa > 2:117750‑M2/1‑133 (MQ=255) tGTCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaaga > 1:276083‑M2/1‑131 (MQ=255) ccATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGTGGCGAAAAATTTATTTTAAGCTCACTCACATATCGCAACAtttactttaagaca < 2:520830‑M2/143‑15 (MQ=255) ataATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCCGCGGTATCTTTCACTCAAGCTCACTCACATATCGCAACAtttactttaagacaattccagg < 2:521000‑M2/143‑23 (MQ=255) cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta < 2:476448‑M2/143‑30 (MQ=255) cGTAACGTTTACCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta > 1:213929‑M2/1‑114 (MQ=255) tAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattata > 2:459031‑M2/1‑112 (MQ=255) aCGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattataca < 2:548187‑M2/143‑34 (MQ=255) ttATCGTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATCTCGCAACAttaactttaagacaattccaggcaaataatacaaaac < 1:129031‑M2/143‑38 (MQ=255) cATGTAATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacacttta < 1:595158‑M2/143‑42 (MQ=255) aTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttac < 1:34623‑M2/143‑43 (MQ=255) tGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacg > 2:234923‑M2/1‑100 (MQ=255) gTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgg > 2:616993‑M2/1‑99 (MQ=255) cTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacactgcgaggcagagtatacaacactttacgggatagt < 2:297565‑M2/143‑51 (MQ=255) tAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttcctttaagacaattcccggccaattatacatccctttcccgtatagtt < 2:189522‑M2/143‑52 (MQ=255) aaGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaa < 2:51257‑M2/143‑53 (MQ=255) ttATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATAATACCCactacattaagacaattccaggcaaattatacaacactttacgggatagtaagtccg < 2:330259‑M2/143‑58 (MQ=255) cGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACACACATATCGCAACAtttactttaagacacatccaggcaaattatacaacactttacgggatagtaagaccgcatga < 1:35689‑M2/143‑63 (MQ=255) gAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggctagtacgtccgcctgac < 2:252464‑M2/143‑64 (MQ=255) aaaaaTTATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa > 1:298001‑M2/1‑79 (MQ=255) aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa > 1:240576‑M2/1‑79 (MQ=255) aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattacaggcaaattatacaacactttacgagatagtgagtccgcatgaaa < 1:426368‑M2/143‑65 (MQ=255) tacctaccAACATCTTCCAGTATACTTCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 1:8610‑M2/1‑71 (MQ=255) taCCTACGAACATCTTCCATGCTTCTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 1:41374‑M2/1‑71 (MQ=255) taCCTACGAACATCTTCCACGATACTCCTGCAGCGAAATATTTGTTTTAAGTTGACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 2:406574‑M2/1‑71 (MQ=255) gacCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 1:68553‑M2/2‑71 (MQ=255) tACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgccagaaaaaacgcgagagt < 1:629482‑M2/143‑77 (MQ=255) gAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggc > 1:188143‑M2/1‑64 (MQ=255) aaCATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttagtttacgacaattccaggcaaattatacaacactttccggggtagtaaggccgcctgaagaaacgcgagagggggg < 2:302571‑M2/143‑81 (MQ=255) aaCATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAttgcatttaagacagttccaggcaaattatacaacactttagggggtagtaagtcagcttgtagaatggcgagagtggcg < 2:301936‑M2/143‑81 (MQ=255) tcggccacgcTACTCCTGCTGCCAAATATTTGTCTTGAGCTCACTCACATATCGCAACAtttactttagtacatttccaggcaaactatacaagcctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcatt > 1:647487‑M2/5‑59 (MQ=255) ggATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgac > 2:218845‑M2/1‑52 (MQ=255) cTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaccactttacgggatagtacgtccgcctgaaaaatcgcgagcgtggcgcattaggcgacccaggttg < 1:212673‑M2/143‑100 (MQ=255) cGAAATATTTGTTTTAAGCTCACCCGCATATCGCAACAtttactttacgacaattccaggccaattatacaacactttactggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgt > 1:368211‑M2/1‑38 (MQ=255) gAAATAATTGATTTAAGCTCACTCACATATCGCAACAtttactgtaagacaattccaggcaaattatacaacaatttacgggatagtaagtccgcctgaaaaatcgcgagaatggcgcattaggtgacccatgttgttccgtt > 2:47168‑M2/1‑37 (MQ=255) aaTATTTGTTTTAAGTTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaactctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgttta > 1:25052‑M2/1‑35 (MQ=255) tttGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtca < 1:116756‑M2/143‑113 (MQ=255) ttttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgat < 2:520258‑M2/143‑117 (MQ=255) ttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgcctagttattatgg < 2:59220‑M2/143‑119 (MQ=255) ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 1:189522‑M2/1‑16 (MQ=255) ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 2:43477‑M2/1‑16 (MQ=255) tcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaagtatgcagg < 1:679722‑M2/143‑129 (MQ=255) atatCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaag < 1:318621‑M2/143‑133 (MQ=255) cGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatggtgttacgacgagcccagatgaactagacagctaagggga < 1:657010‑M2/143‑137 (MQ=255) cGCAACActtactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaagggga > 2:291974‑M2/1‑7 (MQ=255) atttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaaggggaattatc > 2:34623‑M2/1‑1 (MQ=255) | TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA > NC_000913/2023656‑2023937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |