Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,023,805 (CTTTA)2→1 intergenic (+127/‑159) fliR → / → rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2023796 2023800 5 51 [0] [0] 53 fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2023801 =0 (0.000)47 (1.230) 38/266 0.1 100% intergenic (+123/‑167) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 = 2023795 0 (0.000)intergenic (+117/‑173) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA  >  NC_000913/2023656‑2023937
                                                                                                                                           |                                                                                                                                              
ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCCCCTATCGCGACAttt                                                                                                                                             <  2:324031‑M2/143‑4 (MQ=255)
   gTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTTACATATCGCAACAtttact                                                                                                                                          <  2:253214‑M2/143‑7 (MQ=255)
    taaattGACATTCATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactt                                                                                                                                         >  1:678298‑M2/3‑136 (MQ=255)
    tGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATGCTCCTGCATCGAAATATTTGTTTTACGCTCACTCACATATCGCAAAAtttgctt                                                                                                                                         <  2:273532‑M2/143‑8 (MQ=255)
       aTTGTCATTATTATCATGCTATAAGGTTTATCTGGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATAGTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa                                                                                                                                      >  1:614359‑M2/1‑133 (MQ=255)
       aTTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa                                                                                                                                      >  2:117750‑M2/1‑133 (MQ=255)
         tGTCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaaga                                                                                                                                    >  1:276083‑M2/1‑131 (MQ=255)
           ccATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGTGGCGAAAAATTTATTTTAAGCTCACTCACATATCGCAACAtttactttaagaca                                                                                                                                  <  2:520830‑M2/143‑15 (MQ=255)
                   ataATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCCGCGGTATCTTTCACTCAAGCTCACTCACATATCGCAACAtttactttaagacaattccagg                                                                                                                          <  2:521000‑M2/143‑23 (MQ=255)
                          cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta                                                                                                                   <  2:476448‑M2/143‑30 (MQ=255)
                          cGTAACGTTTACCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta                                                                                                                   >  1:213929‑M2/1‑114 (MQ=255)
                            tAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattata                                                                                                                 >  2:459031‑M2/1‑112 (MQ=255)
                              aCGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattataca                                                                                                               <  2:548187‑M2/143‑34 (MQ=255)
                                  ttATCGTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATCTCGCAACAttaactttaagacaattccaggcaaataatacaaaac                                                                                                           <  1:129031‑M2/143‑38 (MQ=255)
                                      cATGTAATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacacttta                                                                                                       <  1:595158‑M2/143‑42 (MQ=255)
                                       aTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttac                                                                                                      <  1:34623‑M2/143‑43 (MQ=255)
                                        tGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacg                                                                                                     >  2:234923‑M2/1‑100 (MQ=255)
                                         gTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgg                                                                                                    >  2:616993‑M2/1‑99 (MQ=255)
                                               cTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacactgcgaggcagagtatacaacactttacgggatagt                                                                                              <  2:297565‑M2/143‑51 (MQ=255)
                                                tAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttcctttaagacaattcccggccaattatacatccctttcccgtatagtt                                                                                             <  2:189522‑M2/143‑52 (MQ=255)
                                                 aaGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaa                                                                                            <  2:51257‑M2/143‑53 (MQ=255)
                                                      ttATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATAATACCCactacattaagacaattccaggcaaattatacaacactttacgggatagtaagtccg                                                                                       <  2:330259‑M2/143‑58 (MQ=255)
                                                           cGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACACACATATCGCAACAtttactttaagacacatccaggcaaattatacaacactttacgggatagtaagaccgcatga                                                                                  <  1:35689‑M2/143‑63 (MQ=255)
                                                            gAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggctagtacgtccgcctgac                                                                                 <  2:252464‑M2/143‑64 (MQ=255)
                                                             aaaaaTTATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa                                                                                >  1:298001‑M2/1‑79 (MQ=255)
                                                             aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaa                                                                                >  1:240576‑M2/1‑79 (MQ=255)
                                                             aaaaaTAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattacaggcaaattatacaacactttacgagatagtgagtccgcatgaaa                                                                                <  1:426368‑M2/143‑65 (MQ=255)
                                                                     tacctaccAACATCTTCCAGTATACTTCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga                                                                        >  1:8610‑M2/1‑71 (MQ=255)
                                                                     taCCTACGAACATCTTCCATGCTTCTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga                                                                        >  1:41374‑M2/1‑71 (MQ=255)
                                                                     taCCTACGAACATCTTCCACGATACTCCTGCAGCGAAATATTTGTTTTAAGTTGACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga                                                                        >  2:406574‑M2/1‑71 (MQ=255)
                                                                     gacCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga                                                                        >  1:68553‑M2/2‑71 (MQ=255)
                                                                         tACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgccagaaaaaacgcgagagt                                                                    <  1:629482‑M2/143‑77 (MQ=255)
                                                                            gAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggc                                                                 >  1:188143‑M2/1‑64 (MQ=255)
                                                                             aaCATCTTCCAGGATACTCCTGCAGCGAAATCTTTGTTTTAAGCTCACTCACATATCGCAACAtttagtttacgacaattccaggcaaattatacaacactttccggggtagtaaggccgcctgaagaaacgcgagagggggg                                                                <  2:302571‑M2/143‑81 (MQ=255)
                                                                             aaCATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAttgcatttaagacagttccaggcaaattatacaacactttagggggtagtaagtcagcttgtagaatggcgagagtggcg                                                                <  2:301936‑M2/143‑81 (MQ=255)
                                                                                 tcggccacgcTACTCCTGCTGCCAAATATTTGTCTTGAGCTCACTCACATATCGCAACAtttactttagtacatttccaggcaaactatacaagcctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcatt                                                            >  1:647487‑M2/5‑59 (MQ=255)
                                                                                        ggATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgac                                                     >  2:218845‑M2/1‑52 (MQ=255)
                                                                                                cTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaccactttacgggatagtacgtccgcctgaaaaatcgcgagcgtggcgcattaggcgacccaggttg                                             <  1:212673‑M2/143‑100 (MQ=255)
                                                                                                      cGAAATATTTGTTTTAAGCTCACCCGCATATCGCAACAtttactttacgacaattccaggccaattatacaacactttactggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgt                                       >  1:368211‑M2/1‑38 (MQ=255)
                                                                                                       gAAATAATTGATTTAAGCTCACTCACATATCGCAACAtttactgtaagacaattccaggcaaattatacaacaatttacgggatagtaagtccgcctgaaaaatcgcgagaatggcgcattaggtgacccatgttgttccgtt                                      >  2:47168‑M2/1‑37 (MQ=255)
                                                                                                         aaTATTTGTTTTAAGTTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaactctttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgttta                                    >  1:25052‑M2/1‑35 (MQ=255)
                                                                                                             tttGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtca                                <  1:116756‑M2/143‑113 (MQ=255)
                                                                                                                 ttttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgat                            <  2:520258‑M2/143‑117 (MQ=255)
                                                                                                                   ttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgcctagttattatgg                          <  2:59220‑M2/143‑119 (MQ=255)
                                                                                                                            ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag                 >  1:189522‑M2/1‑16 (MQ=255)
                                                                                                                            ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag                 >  2:43477‑M2/1‑16 (MQ=255)
                                                                                                                             tcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaagtatgcagg                <  1:679722‑M2/143‑129 (MQ=255)
                                                                                                                                 atatCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaag            <  1:318621‑M2/143‑133 (MQ=255)
                                                                                                                                     cGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatggtgttacgacgagcccagatgaactagacagctaagggga        <  1:657010‑M2/143‑137 (MQ=255)
                                                                                                                                     cGCAACActtactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaagggga        >  2:291974‑M2/1‑7 (MQ=255)
                                                                                                                                           atttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaaggggaattatc  >  2:34623‑M2/1‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                              
TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAA  >  NC_000913/2023656‑2023937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.