New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3877664	NA (NA)	3 (0.080)	3/270	5.9	NA	noncoding (80/98 nt)	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3877675	NA (NA)					noncoding (91/98 nt)	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877525‑3877803                                                                                                                                            |                                                                                                                                            ttGCGGATTGCAGAAATGAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                                                                          <  1:403350/143‑1 (MQ=255)  tGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACATCATCACATACCATTTTATTGCAAGATTTTCGTAGGCCTGATAAGc                                                                                                                                         <  2:682860/143‑1 (MQ=37)     ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTGCGTAGGCCTGATAAGCGTa                                                                                                                                      <  2:488906/143‑1 (MQ=255)     ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCCTTTCTGACAGCGTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa                                                                                                                                      <  2:446909/143‑1 (MQ=25)            aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATTAGCGTAGCGCATc                                                                                                                               >  2:23138/1‑143 (MQ=255)              aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGTCCTGATAAGCGTAGCGCATCAg                                                                                                                             >  1:601730/1‑143 (MQ=255)                 gaaaaaGGGCGGAGACGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                                                          <  2:228677/142‑1 (MQ=255)                    aaaGGGCGGAGATCATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAATTAAATACATTTCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGc                                                                                                                       >  2:665762/1‑143 (MQ=255)                                     tcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                                                                      >  2:627814/1‑143 (MQ=255)                                        gCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCATTATCCGGCCTACAAAATCATGAAACTTCAATACATTGCAAGCTTTTCGTAGGCCTGATAAGCGGACGGCCTCAGGCACGCGCGAACAGATGGCGCCAttc                                                                                                   >  1:14458/1‑142 (MQ=18)                                             tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAGTTCAGTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTACCGCCATTAAagat                                                                                              >  1:462085/1‑143 (MQ=255)                                             tttCTTAGAGCGTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAatat                                                                                              <  2:92167/143‑1 (MQ=255)                                               tCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACCTTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCg                                                                                            <  2:74556/143‑1 (MQ=255)                                                 ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCAACTAGTGACCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGat                                                                                          <  2:521694/143‑1 (MQ=25)                                                 ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAACATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTACATATCGag                                                                                          >  2:54037/1‑142 (MQ=255)                                                  tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGata                                                                                         <  1:551019/143‑1 (MQ=255)                                                   ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCGTGATAACCGTAGCCCGTCAGCCTCGCTCGCTTGGTTAGCTGCATTAAATATCTatat                                                                                        >  2:365640/1‑143 (MQ=21)                                                   ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCCCGCTCGCATGGTTAGCGCCATTAAATATCGatat                                                                                        >  1:12109/1‑143 (MQ=255)                                                       cttcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCCCATCAGGCACGCCCGCACGGTTAGCGCCATTAGATATCGATACTcgc                                                                                    >  2:667354/1‑143 (MQ=21)                                                              ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAACATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAACGCCATTAACTAGCGATAGTCGCCGCTTTc                                                                             >  1:31671/1‑143 (MQ=21)                                                                ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                           <  1:456936/143‑1 (MQ=255)                                                                ggATGAGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                           <  2:221470/143‑1 (MQ=255)                                                                   tGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc                                                                        <  2:599338/143‑1 (MQ=255)                                                                       gcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                                                                    >  2:674105/1‑143 (MQ=255)                                                                            aaCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctctgc                                                               >  2:220363/1‑141 (MQ=255)                                                                              cGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCAGCTTTAAGGGCGTGCTCTTCaa                                                             >  2:658841/1‑143 (MQ=255)                                                                               gCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt                                                            <  1:397169/143‑1 (MQ=255)                                                                                  ttATCCGGCCTACAAAATCATGCAAATTCAAGACATTGCAAGATTTTCGTAGGCCTGAGAAGCGTAGCGCATCAGTCACTCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaaa                                                         <  1:342712/143‑1 (MQ=255)                                                                                   tATCCGGCCTACAAAATCATGAAAATTCAATACTTTGCAATATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAAc                                                        <  2:211616/143‑1 (MQ=255)                                                                                      ccGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCa                                                     <  2:167987/143‑1 (MQ=255)                                                                                         gCCTATAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACgg                                                  <  1:30091/143‑1 (MQ=255)                                                                                             aCAAAATCATGAAACTTCAATACATTGCAAGATTTCCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg                                              <  1:633565/143‑1 (MQ=255)                                                                                              cAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCgg                                             >  1:236704/1‑143 (MQ=255)                                                                                               aaaaTCATGATAGTTCATTGCATTTCAAGATTTTCGTAGGCGTGATAAGCGTAGCGCATCTGGTACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAATCGCACGGCGCGGt                                            <  1:556955/143‑1 (MQ=255)                                                                                                                  aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                              >  1:68517/1‑106 (MQ=255)                                                                                                                  aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                              <  2:68517/106‑1 (MQ=255)                                                                                                                      tGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGCTATTCGCCGCTTTCAGGGCGCTCTCTTCCATAAACGCACGGCGCGGTTCCACGGCGTCGCCCATCAGCgt                     >  1:403812/1‑143 (MQ=255)                                                                                                                         aaGGTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCGCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggt                  <  1:692694/143‑1 (MQ=255)                                                                                                                             ttttCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaac              <  1:23138/143‑1 (MQ=255)                                                                                                                                        cTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCAATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAGCAACTGGTCGgc   >  1:483789/1‑143 (MQ=255)                                                                                                                                        cTGATAAGCGTAGCGAATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTAAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGGGAACAACTGggcggc   >  2:240791/1‑143 (MQ=255)                                                                                                                                         tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca  <  2:64426/143‑1 (MQ=255)                                                                                                                                         tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca  <  1:365640/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877525‑3877803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.